miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 76924 0.7 0.944164
Target:  5'- aCGGcgGCGCCGACGCGAUCcguuucgaGCCGaUGCu -3'
miRNA:   3'- gGCC--UGUGGUUGUGCUAG--------UGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 42106 0.69 0.959956
Target:  5'- -aGGaACGgCAGCAUcGUCACCGUCAa -3'
miRNA:   3'- ggCC-UGUgGUUGUGcUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 151416 0.79 0.530749
Target:  5'- gCCGGcGCGCCAGCucGCGGUCGCCGacgaucaUCGCg -3'
miRNA:   3'- -GGCC-UGUGGUUG--UGCUAGUGGC-------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 124720 0.76 0.710409
Target:  5'- cCCGGcGCAgCGGCACGGcgCGCCGUCGg -3'
miRNA:   3'- -GGCC-UGUgGUUGUGCUa-GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 115198 0.74 0.812253
Target:  5'- gCCGGcgGCGCCGACugaugAUGAUCACCGgcggugCGCu -3'
miRNA:   3'- -GGCC--UGUGGUUG-----UGCUAGUGGCa-----GUG- -5'
15662 3' -52.9 NC_004065.1 + 188870 0.73 0.82905
Target:  5'- gCCGc-CGgCGACACGGUCGCCGUgACg -3'
miRNA:   3'- -GGCcuGUgGUUGUGCUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 138824 0.72 0.867919
Target:  5'- cCCGGAgCGgaCGGCACcGUCGCCGUCAg -3'
miRNA:   3'- -GGCCU-GUg-GUUGUGcUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 22266 0.72 0.888848
Target:  5'- gCCGGGuuagUGCCGGCgGCGAUgACCGUCGg -3'
miRNA:   3'- -GGCCU----GUGGUUG-UGCUAgUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 192113 0.71 0.919353
Target:  5'- uCgGGGCGCCAuCGCGGcgauagUCgcgGCCGUCACc -3'
miRNA:   3'- -GgCCUGUGGUuGUGCU------AG---UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 19025 0.71 0.928432
Target:  5'- cUCGGACGCCAAgACGAacgucucguuuucgUCguccccgcuACUGUCACu -3'
miRNA:   3'- -GGCCUGUGGUUgUGCU--------------AG---------UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 121190 0.67 0.985392
Target:  5'- cCCGGAC-CCGAC-CGugugcaCGCCG-CACa -3'
miRNA:   3'- -GGCCUGuGGUUGuGCua----GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 192648 0.67 0.985392
Target:  5'- uCUGGuAUcCCGA-GCGAUCACCGUgACg -3'
miRNA:   3'- -GGCC-UGuGGUUgUGCUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 103508 0.69 0.96956
Target:  5'- gCCGGACACCugugugaagagGACGCGAgcagcugccuggUCAUCccguGUCGCc -3'
miRNA:   3'- -GGCCUGUGG-----------UUGUGCU------------AGUGG----CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 194619 0.68 0.972089
Target:  5'- aCCGGcCGCCGAucgccacgucgcuCGCGAgccaggagaUCGCgCGUCGCg -3'
miRNA:   3'- -GGCCuGUGGUU-------------GUGCU---------AGUG-GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 44159 0.68 0.97497
Target:  5'- gCGGcGCAUCGACGCGAUCuCCGa--- -3'
miRNA:   3'- gGCC-UGUGGUUGUGCUAGuGGCagug -5'
15662 3' -52.9 NC_004065.1 + 61321 0.68 0.97497
Target:  5'- aUGGugACCAACGgccucuCGGUguCCGUCAg -3'
miRNA:   3'- gGCCugUGGUUGU------GCUAguGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 30753 0.68 0.977395
Target:  5'- cCCGGAaucauCCAACGCcGUCGCC-UCAUc -3'
miRNA:   3'- -GGCCUgu---GGUUGUGcUAGUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 120868 0.68 0.98172
Target:  5'- gCGGACGCCAcgaGCuacuCGAUCcUCGUgCACc -3'
miRNA:   3'- gGCCUGUGGU---UGu---GCUAGuGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 2062 0.68 0.983634
Target:  5'- aCGGGaACC---GCGAUCGCCGcCGCg -3'
miRNA:   3'- gGCCUgUGGuugUGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 140129 0.67 0.985223
Target:  5'- cCCGGAcCACCGuCACGGacccugcUCACUuaauaauaaaaaGUCACa -3'
miRNA:   3'- -GGCCU-GUGGUuGUGCU-------AGUGG------------CAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.