miRNA display CGI


Results 1 - 20 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 77427 0.72 0.9011
Target:  5'- cCCGGGCGCUgcugacggacgacGACGCGGU-GCCGUaCACc -3'
miRNA:   3'- -GGCCUGUGG-------------UUGUGCUAgUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 107585 0.73 0.852941
Target:  5'- -aGGACgaagaACUucuGCGCGAggcUCACCGUCACg -3'
miRNA:   3'- ggCCUG-----UGGu--UGUGCU---AGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 139592 0.73 0.860529
Target:  5'- -aGGugGCCGcgGCGAUCGCCGUUg- -3'
miRNA:   3'- ggCCugUGGUugUGCUAGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 51515 0.72 0.867919
Target:  5'- gUCGuAgGCCAugACGA-CGCCGUCGCg -3'
miRNA:   3'- -GGCcUgUGGUugUGCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 75321 0.72 0.875106
Target:  5'- -aGGACGCaguaGACGCGG-CGuCCGUCGCg -3'
miRNA:   3'- ggCCUGUGg---UUGUGCUaGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 142339 0.72 0.875106
Target:  5'- cUCGaACGCCGGCgGCGAgagCACCGUCAg -3'
miRNA:   3'- -GGCcUGUGGUUG-UGCUa--GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 194814 0.72 0.882083
Target:  5'- cCUGaACGCCGugGCGGUgGCCGcCACg -3'
miRNA:   3'- -GGCcUGUGGUugUGCUAgUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 113983 0.72 0.884815
Target:  5'- uUCGGACucauacggccuccucGCCAGCACGGUCgacgACgGUUACa -3'
miRNA:   3'- -GGCCUG---------------UGGUUGUGCUAG----UGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 38483 0.72 0.888848
Target:  5'- -aGcGACACCAcUACGAacaCGCCGUCGCu -3'
miRNA:   3'- ggC-CUGUGGUuGUGCUa--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 147408 0.73 0.837195
Target:  5'- cCCGGACGCaaccgcguccagCAGCACGA-CGgCGUCAUg -3'
miRNA:   3'- -GGCCUGUG------------GUUGUGCUaGUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 90695 0.74 0.820734
Target:  5'- gCUGGGCACgAACACGAUC-CgCGUCu- -3'
miRNA:   3'- -GGCCUGUGgUUGUGCUAGuG-GCAGug -5'
15662 3' -52.9 NC_004065.1 + 59707 0.74 0.794827
Target:  5'- -aGGGCGCCGagcggccgcggcGCACGGcgACCGUCGCg -3'
miRNA:   3'- ggCCUGUGGU------------UGUGCUagUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 91452 0.76 0.690726
Target:  5'- cCUGGACGCCGAaGCGGcgccuggCAUCGUCACa -3'
miRNA:   3'- -GGCCUGUGGUUgUGCUa------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 44842 0.76 0.700595
Target:  5'- aCGGACAgCGACACGGgccggagCAgCGUCGCc -3'
miRNA:   3'- gGCCUGUgGUUGUGCUa------GUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 224798 0.76 0.710409
Target:  5'- gCGGGCGgCAGCACGGUCacgaccGCCGUCu- -3'
miRNA:   3'- gGCCUGUgGUUGUGCUAG------UGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 71761 0.75 0.729838
Target:  5'- gUCGGugACCGuguugGCGuCGAUCGCCGcCACu -3'
miRNA:   3'- -GGCCugUGGU-----UGU-GCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 61063 0.75 0.739435
Target:  5'- aCGGACACCGAgAggccguUGGUCACCauGUCGCa -3'
miRNA:   3'- gGCCUGUGGUUgU------GCUAGUGG--CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 79957 0.75 0.774094
Target:  5'- gUCGGGCAgggugaggacguacUCGACACGGUCGCCGacCGCg -3'
miRNA:   3'- -GGCCUGU--------------GGUUGUGCUAGUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 126778 0.75 0.776837
Target:  5'- uUGGACACCAuCACcGUCGuCUGUCGCg -3'
miRNA:   3'- gGCCUGUGGUuGUGcUAGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 132297 0.75 0.776837
Target:  5'- gCCGGGCAUaAACAUGuUCGCCGUCu- -3'
miRNA:   3'- -GGCCUGUGgUUGUGCuAGUGGCAGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.