miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 56386 0.66 0.994785
Target:  5'- gCCGaGGCugCAGaagGCGAgcgcCGCCGUCGu -3'
miRNA:   3'- -GGC-CUGugGUUg--UGCUa---GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 72733 0.66 0.994785
Target:  5'- cCCGGucuucagccGCGCCGACACcgucUCGCuCGUCGu -3'
miRNA:   3'- -GGCC---------UGUGGUUGUGcu--AGUG-GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 124212 0.66 0.994785
Target:  5'- aCCGGgACAUCAACACGGUguUC--CACg -3'
miRNA:   3'- -GGCC-UGUGGUUGUGCUAguGGcaGUG- -5'
15662 3' -52.9 NC_004065.1 + 97488 0.66 0.994785
Target:  5'- cCCGGAgUGCCGcaGCGAUCugCGgcggaUCACc -3'
miRNA:   3'- -GGCCU-GUGGUugUGCUAGugGC-----AGUG- -5'
15662 3' -52.9 NC_004065.1 + 21996 0.66 0.994785
Target:  5'- aCGGccACGCCG--ACGGUCAUCGcCGCc -3'
miRNA:   3'- gGCC--UGUGGUugUGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 139539 0.66 0.994785
Target:  5'- gUCGGACGCCAagACGCGAgcgaguauCCGagaaugCGCg -3'
miRNA:   3'- -GGCCUGUGGU--UGUGCUagu-----GGCa-----GUG- -5'
15662 3' -52.9 NC_004065.1 + 194572 0.66 0.994785
Target:  5'- gCGGGCuccgACCAGCACGAcgguggacaccUCgaagacaaGCCGUCGu -3'
miRNA:   3'- gGCCUG----UGGUUGUGCU-----------AG--------UGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 121078 0.66 0.994785
Target:  5'- aCGuACACCAcucccgagcuCugGAcCACCGUCACc -3'
miRNA:   3'- gGCcUGUGGUu---------GugCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 161470 0.66 0.993993
Target:  5'- uCCGGGC-CUu-CGgGA-CGCCGUCACc -3'
miRNA:   3'- -GGCCUGuGGuuGUgCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 112491 0.66 0.993993
Target:  5'- gCCGaGACAUCAu--CGGUCAccCCGUCGg -3'
miRNA:   3'- -GGC-CUGUGGUuguGCUAGU--GGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 37724 0.66 0.993993
Target:  5'- cCCGGACACgcgcgugaAGCugGAUCgcACCGagagacggCACg -3'
miRNA:   3'- -GGCCUGUGg-------UUGugCUAG--UGGCa-------GUG- -5'
15662 3' -52.9 NC_004065.1 + 109675 0.66 0.993993
Target:  5'- uCCGGGCGCUcuCcgACGAcaUCGCCGccgagaUCGCg -3'
miRNA:   3'- -GGCCUGUGGuuG--UGCU--AGUGGC------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 125124 0.66 0.993993
Target:  5'- gCCGG-CACCAccGCGCcGUCGCCcaGcCGCg -3'
miRNA:   3'- -GGCCuGUGGU--UGUGcUAGUGG--CaGUG- -5'
15662 3' -52.9 NC_004065.1 + 117338 0.66 0.993993
Target:  5'- gUGGACcCCGGCuuguCGGggucCGCCGUCAg -3'
miRNA:   3'- gGCCUGuGGUUGu---GCUa---GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 147444 0.66 0.993993
Target:  5'- nUGGACGCCAACGaguUCugCGggaucCACg -3'
miRNA:   3'- gGCCUGUGGUUGUgcuAGugGCa----GUG- -5'
15662 3' -52.9 NC_004065.1 + 75765 0.66 0.993993
Target:  5'- aCCaGGcACGCCAACGCuauUCACUG-CGCc -3'
miRNA:   3'- -GG-CC-UGUGGUUGUGcu-AGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 68840 0.66 0.993993
Target:  5'- gUCGG-CGCU--CugGAUCGCCGcCGCc -3'
miRNA:   3'- -GGCCuGUGGuuGugCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 136110 0.66 0.993993
Target:  5'- aUCGGcccaACCGACACGA-CACCcaucgacgagGUCGCc -3'
miRNA:   3'- -GGCCug--UGGUUGUGCUaGUGG----------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 130356 0.66 0.993993
Target:  5'- aCCGGACGCUgucGGCGCcg-CGCCGcCGg -3'
miRNA:   3'- -GGCCUGUGG---UUGUGcuaGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 213195 0.66 0.993993
Target:  5'- aCCGc-CACCuccgacgaggguGACACGAUCACCacccUCACg -3'
miRNA:   3'- -GGCcuGUGG------------UUGUGCUAGUGGc---AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.