miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 45788 0.71 0.664995
Target:  5'- gCCGC---CGCCGCCGCGgcgccggguggcgUAGACCGu -3'
miRNA:   3'- -GGCGcuaGCGGCGGCGCaa-----------GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 118420 0.71 0.648719
Target:  5'- gCCGUGAcggcCGCCGCCGCGgucUCGGugacaauccauucuACCGc -3'
miRNA:   3'- -GGCGCUa---GCGGCGGCGCa--AGUC--------------UGGC- -5'
15662 5' -58.7 NC_004065.1 + 56036 0.74 0.491703
Target:  5'- gCCGCGAUCGCCuGCUcgGCGccgAGACCGc -3'
miRNA:   3'- -GGCGCUAGCGG-CGG--CGCaagUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 128698 0.78 0.303578
Target:  5'- cCCGCGGaCGCCuccGCCGCGcUCAGACuCGg -3'
miRNA:   3'- -GGCGCUaGCGG---CGGCGCaAGUCUG-GC- -5'
15662 5' -58.7 NC_004065.1 + 194712 0.69 0.772385
Target:  5'- gCgGCGG-CGCCGCCGUGcccaaccgcUUC-GACCGa -3'
miRNA:   3'- -GgCGCUaGCGGCGGCGC---------AAGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 118701 0.7 0.721662
Target:  5'- aCCGCccggccgaggaagacGAggaCGCCGCCGUGUUC--GCCGg -3'
miRNA:   3'- -GGCG---------------CUa--GCGGCGGCGCAAGucUGGC- -5'
15662 5' -58.7 NC_004065.1 + 146805 0.73 0.584551
Target:  5'- cCCGCGA-CGCCGacgaUGuCGggCAGGCCGa -3'
miRNA:   3'- -GGCGCUaGCGGCg---GC-GCaaGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 138365 0.79 0.278158
Target:  5'- aCGCGAUCGCCGUCGCGgUCcGACg- -3'
miRNA:   3'- gGCGCUAGCGGCGGCGCaAGuCUGgc -5'
15662 5' -58.7 NC_004065.1 + 158977 0.71 0.689746
Target:  5'- gCCGCGcugGUCGCaCGUCggGCGcgCAGACCa -3'
miRNA:   3'- -GGCGC---UAGCG-GCGG--CGCaaGUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 61778 0.81 0.215515
Target:  5'- aCUGCGAUCGCCugcgggaugcugucGCCGCGUUCuucaAGACCu -3'
miRNA:   3'- -GGCGCUAGCGG--------------CGGCGCAAG----UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 139646 0.72 0.613222
Target:  5'- gCGCGG--GCCGUCGCGaccccaUCAGACCGc -3'
miRNA:   3'- gGCGCUagCGGCGGCGCa-----AGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 188878 0.71 0.679301
Target:  5'- aCGUGcUCGCCGCCGgcgacacggucgcCGUgaCGGACCGa -3'
miRNA:   3'- gGCGCuAGCGGCGGC-------------GCAa-GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 201274 0.73 0.575047
Target:  5'- -gGCGAggCGCCGCgcgcaCGCGgccucgagUCAGACCGg -3'
miRNA:   3'- ggCGCUa-GCGGCG-----GCGCa-------AGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 32978 0.74 0.518947
Target:  5'- gCGCGA-CGCCGCCaaGUUCAugGACCu -3'
miRNA:   3'- gGCGCUaGCGGCGGcgCAAGU--CUGGc -5'
15662 5' -58.7 NC_004065.1 + 142591 0.76 0.406253
Target:  5'- gUGCucUCGCCGCCgGCGUUCgAGACCu -3'
miRNA:   3'- gGCGcuAGCGGCGG-CGCAAG-UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 20982 0.78 0.316944
Target:  5'- gCCGUGAUCGCCGUCGuCGccgUCGGuGCCGu -3'
miRNA:   3'- -GGCGCUAGCGGCGGC-GCa--AGUC-UGGC- -5'
15662 5' -58.7 NC_004065.1 + 151384 0.69 0.781117
Target:  5'- aUCGCGGcgUUGCCGCCGCcUUCGcugcuGCCGu -3'
miRNA:   3'- -GGCGCU--AGCGGCGGCGcAAGUc----UGGC- -5'
15662 5' -58.7 NC_004065.1 + 174832 0.69 0.772385
Target:  5'- gCgGgGGUCGCCGCCGCGauaUUCAcGAUUc -3'
miRNA:   3'- -GgCgCUAGCGGCGGCGC---AAGU-CUGGc -5'
15662 5' -58.7 NC_004065.1 + 59975 0.7 0.736429
Target:  5'- uCCGCGAcggUCGCCgugcGCCGCGgccgcUCGGcGCCc -3'
miRNA:   3'- -GGCGCU---AGCGG----CGGCGCa----AGUC-UGGc -5'
15662 5' -58.7 NC_004065.1 + 189555 0.7 0.736429
Target:  5'- -aGCGGcaUCGCCgGCUGuCGUUCAGAgacCCGg -3'
miRNA:   3'- ggCGCU--AGCGG-CGGC-GCAAGUCU---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.