miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 143227 0.66 0.912498
Target:  5'- gCCGCGuUCGCCgcGCCcgucuucgcuaacccGCGUcacccguacuacugUCAGACCc -3'
miRNA:   3'- -GGCGCuAGCGG--CGG---------------CGCA--------------AGUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 223986 0.66 0.911941
Target:  5'- aCuCGGUCGUCGCCG-GUccCAGGCUGa -3'
miRNA:   3'- gGcGCUAGCGGCGGCgCAa-GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 73217 0.66 0.911941
Target:  5'- uCCGC-AUCGUCGagaaCGgGUUCuuGACCGu -3'
miRNA:   3'- -GGCGcUAGCGGCg---GCgCAAGu-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 149296 0.66 0.911941
Target:  5'- gCCGCcGUCGUCGcCCGCucccgaggUCAGcCCGa -3'
miRNA:   3'- -GGCGcUAGCGGC-GGCGca------AGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 169570 0.66 0.911941
Target:  5'- gCGCGcuGUUGCCGCuguCGCGgcUCcGGCCGg -3'
miRNA:   3'- gGCGC--UAGCGGCG---GCGCa-AGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 141102 0.66 0.911941
Target:  5'- gCCGCGccuucagcggcAUCGCCGaCGCGcUCAGGuuCCu -3'
miRNA:   3'- -GGCGC-----------UAGCGGCgGCGCaAGUCU--GGc -5'
15662 5' -58.7 NC_004065.1 + 165892 0.66 0.911941
Target:  5'- gCCGCacgCGCUGCCGuCGUgguaCGGAUCu -3'
miRNA:   3'- -GGCGcuaGCGGCGGC-GCAa---GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 126504 0.66 0.911941
Target:  5'- cCCGCG-UCGCCaugcGCCGCGcgaUCGucCCGu -3'
miRNA:   3'- -GGCGCuAGCGG----CGGCGCa--AGUcuGGC- -5'
15662 5' -58.7 NC_004065.1 + 19954 0.66 0.911941
Target:  5'- gCCGCa--CGCCuCCGCGuUUCAG-CCGu -3'
miRNA:   3'- -GGCGcuaGCGGcGGCGC-AAGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 57762 0.66 0.911941
Target:  5'- aUCGUcGUCGCCGCCGcCGUcgcucucgguggUCAG-UCGg -3'
miRNA:   3'- -GGCGcUAGCGGCGGC-GCA------------AGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 199514 0.66 0.911941
Target:  5'- aCGCGGcgGCCGCCacguGCGcgCAG-CCGg -3'
miRNA:   3'- gGCGCUagCGGCGG----CGCaaGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 189008 0.66 0.908554
Target:  5'- gUCGCGAucgcccuggugggcuUCGCCGCCGUGcgCcuGCUa -3'
miRNA:   3'- -GGCGCU---------------AGCGGCGGCGCaaGucUGGc -5'
15662 5' -58.7 NC_004065.1 + 138229 0.66 0.906255
Target:  5'- uCUGCGAugucgaggcgcUCGCCGCCGuCGaggagggUCGGGuguCCGa -3'
miRNA:   3'- -GGCGCU-----------AGCGGCGGC-GCa------AGUCU---GGC- -5'
15662 5' -58.7 NC_004065.1 + 119448 0.66 0.906255
Target:  5'- -gGUGGUCGCCGagaccgaCGCcuggCGGACCGc -3'
miRNA:   3'- ggCGCUAGCGGCg------GCGcaa-GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 113643 0.66 0.906255
Target:  5'- gUCGCGAgggaGCCGCagGCGUUCGucCUGa -3'
miRNA:   3'- -GGCGCUag--CGGCGg-CGCAAGUcuGGC- -5'
15662 5' -58.7 NC_004065.1 + 76677 0.66 0.906255
Target:  5'- aUCGCGucggCGCCGCCguccccgaagaaGCGUUCgaAGAgCGc -3'
miRNA:   3'- -GGCGCua--GCGGCGG------------CGCAAG--UCUgGC- -5'
15662 5' -58.7 NC_004065.1 + 138556 0.66 0.906255
Target:  5'- aCGCGAUCaggGCCGCGUcCAcGGCCu -3'
miRNA:   3'- gGCGCUAGcggCGGCGCAaGU-CUGGc -5'
15662 5' -58.7 NC_004065.1 + 42095 0.66 0.900363
Target:  5'- gCGCG-UCGCCggcGCCGaCGUaCGuGACCGu -3'
miRNA:   3'- gGCGCuAGCGG---CGGC-GCAaGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 30981 0.66 0.900363
Target:  5'- gUGgGAUgCGCuCGCCGCGU-CGGGCg- -3'
miRNA:   3'- gGCgCUA-GCG-GCGGCGCAaGUCUGgc -5'
15662 5' -58.7 NC_004065.1 + 192695 0.66 0.900363
Target:  5'- gCCuCGAUCguuauGCUGCCGUGUaccaUCAgcGACCGg -3'
miRNA:   3'- -GGcGCUAG-----CGGCGGCGCA----AGU--CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.