miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15663 3' -57.8 NC_004065.1 + 54721 0.67 0.875095
Target:  5'- gCUgcgCgUGCGCUcgCGGCAgacCGCGCGCGa -3'
miRNA:   3'- -GAa--GgGUGCGA--GCCGUau-GCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 60336 0.67 0.875094
Target:  5'- gCUUgCCgGCGC-CGuacGCGUugGUGCGCAc -3'
miRNA:   3'- -GAA-GGgUGCGaGC---CGUAugCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 149637 0.67 0.875094
Target:  5'- --aCCgGCGCcgUCGGCAggcccugcACGCGcCGCAg -3'
miRNA:   3'- gaaGGgUGCG--AGCCGUa-------UGCGC-GCGU- -5'
15663 3' -57.8 NC_004065.1 + 70046 0.67 0.872995
Target:  5'- uCUUCuCCGCcucGCUCuGCAUccucuucuucagucGCGCGUGCAu -3'
miRNA:   3'- -GAAG-GGUG---CGAGcCGUA--------------UGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 110456 0.67 0.860759
Target:  5'- uCUUCCCucucgACGggCGGCG-GCGCGuCGCGg -3'
miRNA:   3'- -GAAGGG-----UGCgaGCCGUaUGCGC-GCGU- -5'
15663 3' -57.8 NC_004065.1 + 127047 0.67 0.860759
Target:  5'- --cCCCACGCUCaGUuugAUGUGCGUc -3'
miRNA:   3'- gaaGGGUGCGAGcCGua-UGCGCGCGu -5'
15663 3' -57.8 NC_004065.1 + 124445 0.67 0.860759
Target:  5'- gUUCUCGUGCuacUCGGCGgccUGCGCGCAc -3'
miRNA:   3'- gAAGGGUGCG---AGCCGUau-GCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 22838 0.67 0.860759
Target:  5'- --aCCCACGCUCa--AaACGUGCGCGa -3'
miRNA:   3'- gaaGGGUGCGAGccgUaUGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 200213 0.67 0.853301
Target:  5'- -aUCCCAgagacgggacCGCcgUGGCGgaGCGCGCGCu -3'
miRNA:   3'- gaAGGGU----------GCGa-GCCGUa-UGCGCGCGu -5'
15663 3' -57.8 NC_004065.1 + 75060 0.67 0.845657
Target:  5'- -gUCuCCACGCUCGucaGCAUcuuGCGCgaGCGCu -3'
miRNA:   3'- gaAG-GGUGCGAGC---CGUA---UGCG--CGCGu -5'
15663 3' -57.8 NC_004065.1 + 117659 0.68 0.837833
Target:  5'- --cUCCGCGCcgCGaGCccaGCGCGCGCGg -3'
miRNA:   3'- gaaGGGUGCGa-GC-CGua-UGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 98634 0.68 0.829835
Target:  5'- cCUUCgguGCGCUCGGUcgcucguacGUACGCGCGg- -3'
miRNA:   3'- -GAAGgg-UGCGAGCCG---------UAUGCGCGCgu -5'
15663 3' -57.8 NC_004065.1 + 19426 0.68 0.829835
Target:  5'- -gUCCCGC-CUCGGCAgaaaGCG-GCAu -3'
miRNA:   3'- gaAGGGUGcGAGCCGUaug-CGCgCGU- -5'
15663 3' -57.8 NC_004065.1 + 17108 0.68 0.829835
Target:  5'- --gCUCGCcCUCGcCGUGCGUGCGCAg -3'
miRNA:   3'- gaaGGGUGcGAGCcGUAUGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 109201 0.68 0.820844
Target:  5'- --cCCCAgGUcgUCGGCGUACugccgcaggcgcaGCGCGCu -3'
miRNA:   3'- gaaGGGUgCG--AGCCGUAUG-------------CGCGCGu -5'
15663 3' -57.8 NC_004065.1 + 24355 0.68 0.813344
Target:  5'- -aUCUCGCGCaugcugUCGGCG-ACGUGgGCAa -3'
miRNA:   3'- gaAGGGUGCG------AGCCGUaUGCGCgCGU- -5'
15663 3' -57.8 NC_004065.1 + 126503 0.68 0.813344
Target:  5'- --aCCCGCG-UCGcCAUGCGCcGCGCGa -3'
miRNA:   3'- gaaGGGUGCgAGCcGUAUGCG-CGCGU- -5'
15663 3' -57.8 NC_004065.1 + 107353 0.68 0.813344
Target:  5'- --gUCCGCGUagUCGGCcgACaGCGUGCGu -3'
miRNA:   3'- gaaGGGUGCG--AGCCGuaUG-CGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 112578 0.68 0.813344
Target:  5'- --gUCCAUGggCGGCGUGCuGCGuCGCAa -3'
miRNA:   3'- gaaGGGUGCgaGCCGUAUG-CGC-GCGU- -5'
15663 3' -57.8 NC_004065.1 + 130703 0.68 0.804866
Target:  5'- -cUCCCGCaCUCGaCGUAgaucUGCGCGCAg -3'
miRNA:   3'- gaAGGGUGcGAGCcGUAU----GCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.