miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15663 5' -54.6 NC_004065.1 + 48580 0.74 0.606199
Target:  5'- aAGCGGGCAcGGAGUcgGCCUC-CAGGAGg -3'
miRNA:   3'- -UUGCUUGU-CCUCGa-CGGAGcGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 33728 0.66 0.961554
Target:  5'- uGGCG-ACGGuGGCUcggcccagcGCCUUGCAGGAGu -3'
miRNA:   3'- -UUGCuUGUCcUCGA---------CGGAGCGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 222723 0.66 0.960499
Target:  5'- -uCGAucguCAGGAGCU-CCUCGCccgggacccaacguAGGAGg -3'
miRNA:   3'- uuGCUu---GUCCUCGAcGGAGCG--------------UUCUC- -5'
15663 5' -54.6 NC_004065.1 + 62472 0.67 0.95414
Target:  5'- cGGCGAcgGCAGGAGCgGCCgcggCGguAGc- -3'
miRNA:   3'- -UUGCU--UGUCCUCGaCGGa---GCguUCuc -5'
15663 5' -54.6 NC_004065.1 + 70525 0.67 0.950094
Target:  5'- cGACGGagcuGCAGGcGC-GCCUgcaggCGCGAGAGa -3'
miRNA:   3'- -UUGCU----UGUCCuCGaCGGA-----GCGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 32871 0.67 0.950094
Target:  5'- cGAUGGACAGGucgcGCU-CCUCGUccGAGa -3'
miRNA:   3'- -UUGCUUGUCCu---CGAcGGAGCGuuCUC- -5'
15663 5' -54.6 NC_004065.1 + 154228 0.67 0.941305
Target:  5'- gAACGggUGGGAGCcgagGCCgcCGUGAGAc -3'
miRNA:   3'- -UUGCuuGUCCUCGa---CGGa-GCGUUCUc -5'
15663 5' -54.6 NC_004065.1 + 127709 0.68 0.926346
Target:  5'- cACGuguuuCGGGGGCUGCuCUCGCucuccGAGu -3'
miRNA:   3'- uUGCuu---GUCCUCGACG-GAGCGuu---CUC- -5'
15663 5' -54.6 NC_004065.1 + 68319 0.68 0.925811
Target:  5'- aGACGGugucgucguggcuGCGGGAGCUGCUgcaGCAgcugcccguGGAGa -3'
miRNA:   3'- -UUGCU-------------UGUCCUCGACGGag-CGU---------UCUC- -5'
15663 5' -54.6 NC_004065.1 + 221118 0.68 0.920882
Target:  5'- cGCGAACAGuaggcuGGCUGCCagGCA-GAGg -3'
miRNA:   3'- uUGCUUGUCc-----UCGACGGagCGUuCUC- -5'
15663 5' -54.6 NC_004065.1 + 201355 0.68 0.91518
Target:  5'- cGCGAACugcugcGcGAGCUgcGCCUCGCcGGGGg -3'
miRNA:   3'- uUGCUUGu-----C-CUCGA--CGGAGCGuUCUC- -5'
15663 5' -54.6 NC_004065.1 + 122168 0.71 0.770218
Target:  5'- uGACGAACAGGgcggugaguuuguugAGCU-CCUCGguGGGGg -3'
miRNA:   3'- -UUGCUUGUCC---------------UCGAcGGAGCguUCUC- -5'
15663 5' -54.6 NC_004065.1 + 228456 0.71 0.794216
Target:  5'- gGACGAACGGGAccgcGUUGCUcaUCGCGAGu- -3'
miRNA:   3'- -UUGCUUGUCCU----CGACGG--AGCGUUCuc -5'
15663 5' -54.6 NC_004065.1 + 91303 0.71 0.812012
Target:  5'- --gGGACAGGggaugAGCUGCCcCGCGuAGAGg -3'
miRNA:   3'- uugCUUGUCC-----UCGACGGaGCGU-UCUC- -5'
15663 5' -54.6 NC_004065.1 + 229479 0.7 0.829155
Target:  5'- cGCGAACAGGGG--GCgCUCGCAcaGGGGg -3'
miRNA:   3'- uUGCUUGUCCUCgaCG-GAGCGU--UCUC- -5'
15663 5' -54.6 NC_004065.1 + 173999 0.69 0.868754
Target:  5'- uGACGAACAGGAGCU-CCggcaGCAuGAc -3'
miRNA:   3'- -UUGCUUGUCCUCGAcGGag--CGUuCUc -5'
15663 5' -54.6 NC_004065.1 + 23615 0.69 0.875339
Target:  5'- aGGCGGGCAGGcggguggacgggcGGCUgGCCUcgggccgaCGCAGGAGc -3'
miRNA:   3'- -UUGCUUGUCC-------------UCGA-CGGA--------GCGUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 102415 0.69 0.87606
Target:  5'- cGACGGACGGGAGgaGCCggCGCc---- -3'
miRNA:   3'- -UUGCUUGUCCUCgaCGGa-GCGuucuc -5'
15663 5' -54.6 NC_004065.1 + 185337 0.66 0.968093
Target:  5'- aGAUGAGCAGGAaaacguuuuagaGCUGCUUUucaaCAGGAGu -3'
miRNA:   3'- -UUGCUUGUCCU------------CGACGGAGc---GUUCUC- -5'
15663 5' -54.6 NC_004065.1 + 130894 0.72 0.747325
Target:  5'- uGACGGGCGuGGGCUGCCUgGCGGcGGGc -3'
miRNA:   3'- -UUGCUUGUcCUCGACGGAgCGUU-CUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.