Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 15664 | 3' | -59.5 | NC_004065.1 | + | 6253 | 0.7 | 0.599371 |
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Target: 5'- -----cGGCaAGCaGCUCGCGGCCGUc -3' miRNA: 3'- gucagaUCGaUCGcCGAGCGCCGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 55777 | 0.71 | 0.579862 |
|
Target: 5'- gCGGUCUcGGCgccgAGCaGGCgaUCGCGGCUGa -3' miRNA: 3'- -GUCAGA-UCGa---UCG-CCG--AGCGCCGGCa -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 114389 | 0.71 | 0.579862 |
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Target: 5'- -cGUCUAauaCUcuGCGGCUCGgGGCCGUc -3' miRNA: 3'- guCAGAUc--GAu-CGCCGAGCgCCGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 93601 | 0.71 | 0.560491 |
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Target: 5'- gGGUCUGGCcGGCGGCg---GGCCGg -3' miRNA: 3'- gUCAGAUCGaUCGCCGagcgCCGGCa -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 96760 | 0.73 | 0.43208 |
|
Target: 5'- gCAGggCgacGGCggaGGCGGCaUCGCGGCCGUc -3' miRNA: 3'- -GUCa-Ga--UCGa--UCGCCG-AGCGCCGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 116136 | 0.75 | 0.359151 |
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Target: 5'- uGGUC-GGCguccugcGGCGGCUCGgGGCCGg -3' miRNA: 3'- gUCAGaUCGa------UCGCCGAGCgCCGGCa -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 6472 | 1.07 | 0.002715 |
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Target: 5'- gCAGUCUAGCUAGCGGCUCGCGGCCGUa -3' miRNA: 3'- -GUCAGAUCGAUCGCCGAGCGCCGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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