miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 3' -59.5 NC_004065.1 + 1800 0.67 0.763055
Target:  5'- cCGGUCUGaacGC-GGCGGCgaUCGCGGuucCCGUg -3'
miRNA:   3'- -GUCAGAU---CGaUCGCCG--AGCGCC---GGCA- -5'
15664 3' -59.5 NC_004065.1 + 18190 0.67 0.763055
Target:  5'- --aUCUgAGCUGGaCGGCUCGCGaCUGUc -3'
miRNA:   3'- gucAGA-UCGAUC-GCCGAGCGCcGGCA- -5'
15664 3' -59.5 NC_004065.1 + 50734 0.67 0.772106
Target:  5'- aGGUCUAuGCacGGCGGCUCcguGUGGUCGc -3'
miRNA:   3'- gUCAGAU-CGa-UCGCCGAG---CGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 223217 0.67 0.807083
Target:  5'- gAGUCgucGGCggUAGCGGCgaCGCGGUCu- -3'
miRNA:   3'- gUCAGa--UCG--AUCGCCGa-GCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 152337 0.67 0.772106
Target:  5'- aGGUgCUGGCUGuagauGCGGa-CGCGGUCGUg -3'
miRNA:   3'- gUCA-GAUCGAU-----CGCCgaGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 110448 0.67 0.781043
Target:  5'- --cUCgacgGGC-GGCGGCgcgUCGCGGCCGc -3'
miRNA:   3'- gucAGa---UCGaUCGCCG---AGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 136346 0.67 0.807083
Target:  5'- uCAGUUcGGCUgcAGUGGCaUGCGGCgCGa -3'
miRNA:   3'- -GUCAGaUCGA--UCGCCGaGCGCCG-GCa -5'
15664 3' -59.5 NC_004065.1 + 101127 0.67 0.772106
Target:  5'- gCGGUCU-GCUuGCGGaacCGCGaGCCGUu -3'
miRNA:   3'- -GUCAGAuCGAuCGCCga-GCGC-CGGCA- -5'
15664 3' -59.5 NC_004065.1 + 62324 0.67 0.807083
Target:  5'- gCAGUCgaGGCUguagAGgGGCUCG-GGCUGg -3'
miRNA:   3'- -GUCAGa-UCGA----UCgCCGAGCgCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 6684 0.67 0.798539
Target:  5'- aGGUacgUGGCUGGUGGaCggGUGGCCGUu -3'
miRNA:   3'- gUCAg--AUCGAUCGCC-GagCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 149689 0.67 0.798539
Target:  5'- gGGUCUGcaggugaacGCcgGGgGGC-CGCGGCCGc -3'
miRNA:   3'- gUCAGAU---------CGa-UCgCCGaGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 29969 0.67 0.789856
Target:  5'- cCGGUgCUGGCggcGGCGGCg-GCGGCaGUg -3'
miRNA:   3'- -GUCA-GAUCGa--UCGCCGagCGCCGgCA- -5'
15664 3' -59.5 NC_004065.1 + 147739 0.66 0.815482
Target:  5'- -cGUCcaggGGCUGGaCGGCcaccaUGCGGCCGc -3'
miRNA:   3'- guCAGa---UCGAUC-GCCGa----GCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 68137 0.66 0.855037
Target:  5'- gGGUCUgucggacgAGCUGgacGCGGUgaUCGCGGCgGc -3'
miRNA:   3'- gUCAGA--------UCGAU---CGCCG--AGCGCCGgCa -5'
15664 3' -59.5 NC_004065.1 + 31376 0.66 0.847473
Target:  5'- gAGUCUgaucGGCcGGCGGaucCUCuCGGCCGg -3'
miRNA:   3'- gUCAGA----UCGaUCGCC---GAGcGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 69470 0.66 0.831811
Target:  5'- -uGUCgcgccGGCU-GCGGUaCGCGGCCa- -3'
miRNA:   3'- guCAGa----UCGAuCGCCGaGCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 68768 0.66 0.823727
Target:  5'- gCGG-CgguGCUGGCGGCcuUCaaGGCCGUg -3'
miRNA:   3'- -GUCaGau-CGAUCGCCG--AGcgCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 169576 0.66 0.815482
Target:  5'- -uGUUgccGCUGucGCGGCUC-CGGCCGg -3'
miRNA:   3'- guCAGau-CGAU--CGCCGAGcGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 120619 0.66 0.815482
Target:  5'- -cGagUAGCUcGUGGCguccgcCGCGGCCGa -3'
miRNA:   3'- guCagAUCGAuCGCCGa-----GCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 201292 0.66 0.855784
Target:  5'- uCAGUCUccGGCggcGGUGGCgaggcgccgcgcgcaCGCGGCCu- -3'
miRNA:   3'- -GUCAGA--UCGa--UCGCCGa--------------GCGCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.