Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15664 | 3' | -59.5 | NC_004065.1 | + | 1800 | 0.67 | 0.763055 |
Target: 5'- cCGGUCUGaacGC-GGCGGCgaUCGCGGuucCCGUg -3' miRNA: 3'- -GUCAGAU---CGaUCGCCG--AGCGCC---GGCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 18190 | 0.67 | 0.763055 |
Target: 5'- --aUCUgAGCUGGaCGGCUCGCGaCUGUc -3' miRNA: 3'- gucAGA-UCGAUC-GCCGAGCGCcGGCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 152337 | 0.67 | 0.772106 |
Target: 5'- aGGUgCUGGCUGuagauGCGGa-CGCGGUCGUg -3' miRNA: 3'- gUCA-GAUCGAU-----CGCCgaGCGCCGGCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 101127 | 0.67 | 0.772106 |
Target: 5'- gCGGUCU-GCUuGCGGaacCGCGaGCCGUu -3' miRNA: 3'- -GUCAGAuCGAuCGCCga-GCGC-CGGCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 50734 | 0.67 | 0.772106 |
Target: 5'- aGGUCUAuGCacGGCGGCUCcguGUGGUCGc -3' miRNA: 3'- gUCAGAU-CGa-UCGCCGAG---CGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 110448 | 0.67 | 0.781043 |
Target: 5'- --cUCgacgGGC-GGCGGCgcgUCGCGGCCGc -3' miRNA: 3'- gucAGa---UCGaUCGCCG---AGCGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 29969 | 0.67 | 0.789856 |
Target: 5'- cCGGUgCUGGCggcGGCGGCg-GCGGCaGUg -3' miRNA: 3'- -GUCA-GAUCGa--UCGCCGagCGCCGgCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 6684 | 0.67 | 0.798539 |
Target: 5'- aGGUacgUGGCUGGUGGaCggGUGGCCGUu -3' miRNA: 3'- gUCAg--AUCGAUCGCC-GagCGCCGGCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 149689 | 0.67 | 0.798539 |
Target: 5'- gGGUCUGcaggugaacGCcgGGgGGC-CGCGGCCGc -3' miRNA: 3'- gUCAGAU---------CGa-UCgCCGaGCGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 62324 | 0.67 | 0.807083 |
Target: 5'- gCAGUCgaGGCUguagAGgGGCUCG-GGCUGg -3' miRNA: 3'- -GUCAGa-UCGA----UCgCCGAGCgCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 136346 | 0.67 | 0.807083 |
Target: 5'- uCAGUUcGGCUgcAGUGGCaUGCGGCgCGa -3' miRNA: 3'- -GUCAGaUCGA--UCGCCGaGCGCCG-GCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 223217 | 0.67 | 0.807083 |
Target: 5'- gAGUCgucGGCggUAGCGGCgaCGCGGUCu- -3' miRNA: 3'- gUCAGa--UCG--AUCGCCGa-GCGCCGGca -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 192118 | 0.66 | 0.815482 |
Target: 5'- uGGUaucggGGCgccaucGCGGCgauagUCGCGGCCGUc -3' miRNA: 3'- gUCAga---UCGau----CGCCG-----AGCGCCGGCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 147739 | 0.66 | 0.815482 |
Target: 5'- -cGUCcaggGGCUGGaCGGCcaccaUGCGGCCGc -3' miRNA: 3'- guCAGa---UCGAUC-GCCGa----GCGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 184902 | 0.66 | 0.815482 |
Target: 5'- uCGGgagCgGGCgcccgGGUGGCUCgggaGCGGCCGg -3' miRNA: 3'- -GUCa--GaUCGa----UCGCCGAG----CGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 120619 | 0.66 | 0.815482 |
Target: 5'- -cGagUAGCUcGUGGCguccgcCGCGGCCGa -3' miRNA: 3'- guCagAUCGAuCGCCGa-----GCGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 169576 | 0.66 | 0.815482 |
Target: 5'- -uGUUgccGCUGucGCGGCUC-CGGCCGg -3' miRNA: 3'- guCAGau-CGAU--CGCCGAGcGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 68768 | 0.66 | 0.823727 |
Target: 5'- gCGG-CgguGCUGGCGGCcuUCaaGGCCGUg -3' miRNA: 3'- -GUCaGau-CGAUCGCCG--AGcgCCGGCA- -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 91961 | 0.66 | 0.823727 |
Target: 5'- gCGGg--AGCUcGCGGacaUCGUGGCCGc -3' miRNA: 3'- -GUCagaUCGAuCGCCg--AGCGCCGGCa -5' |
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15664 | 3' | -59.5 | NC_004065.1 | + | 149969 | 0.66 | 0.823727 |
Target: 5'- gAGUCcgagGGCcggcGCGGC-CGCGGCCc- -3' miRNA: 3'- gUCAGa---UCGau--CGCCGaGCGCCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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