Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15664 | 3' | -59.5 | NC_004065.1 | + | 18190 | 0.67 | 0.763055 |
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Target: 5'- --aUCUgAGCUGGaCGGCUCGCGaCUGUc -3' miRNA: 3'- gucAGA-UCGAUC-GCCGAGCGCcGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 8295 | 0.68 | 0.706786 |
|
Target: 5'- uGGUCUGGUagucgGGCGGaC-CGUGGUCGUg -3' miRNA: 3'- gUCAGAUCGa----UCGCC-GaGCGCCGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 6684 | 0.67 | 0.798539 |
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Target: 5'- aGGUacgUGGCUGGUGGaCggGUGGCCGUu -3' miRNA: 3'- gUCAg--AUCGAUCGCC-GagCGCCGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 6472 | 1.07 | 0.002715 |
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Target: 5'- gCAGUCUAGCUAGCGGCUCGCGGCCGUa -3' miRNA: 3'- -GUCAGAUCGAUCGCCGAGCGCCGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 6384 | 0.68 | 0.735292 |
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Target: 5'- gAGUaggAGCUGGCGGCg-GCGGCg-- -3' miRNA: 3'- gUCAga-UCGAUCGCCGagCGCCGgca -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 6253 | 0.7 | 0.599371 |
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Target: 5'- -----cGGCaAGCaGCUCGCGGCCGUc -3' miRNA: 3'- gucagaUCGaUCGcCGAGCGCCGGCA- -5' |
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| 15664 | 3' | -59.5 | NC_004065.1 | + | 1800 | 0.67 | 0.763055 |
|
Target: 5'- cCGGUCUGaacGC-GGCGGCgaUCGCGGuucCCGUg -3' miRNA: 3'- -GUCAGAU---CGaUCGCCG--AGCGCC---GGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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