miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 3' -59.5 NC_004065.1 + 1800 0.67 0.763055
Target:  5'- cCGGUCUGaacGC-GGCGGCgaUCGCGGuucCCGUg -3'
miRNA:   3'- -GUCAGAU---CGaUCGCCG--AGCGCC---GGCA- -5'
15664 3' -59.5 NC_004065.1 + 6253 0.7 0.599371
Target:  5'- -----cGGCaAGCaGCUCGCGGCCGUc -3'
miRNA:   3'- gucagaUCGaUCGcCGAGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 6384 0.68 0.735292
Target:  5'- gAGUaggAGCUGGCGGCg-GCGGCg-- -3'
miRNA:   3'- gUCAga-UCGAUCGCCGagCGCCGgca -5'
15664 3' -59.5 NC_004065.1 + 6472 1.07 0.002715
Target:  5'- gCAGUCUAGCUAGCGGCUCGCGGCCGUa -3'
miRNA:   3'- -GUCAGAUCGAUCGCCGAGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 6684 0.67 0.798539
Target:  5'- aGGUacgUGGCUGGUGGaCggGUGGCCGUu -3'
miRNA:   3'- gUCAg--AUCGAUCGCC-GagCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 8295 0.68 0.706786
Target:  5'- uGGUCUGGUagucgGGCGGaC-CGUGGUCGUg -3'
miRNA:   3'- gUCAGAUCGa----UCGCC-GaGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 18190 0.67 0.763055
Target:  5'- --aUCUgAGCUGGaCGGCUCGCGaCUGUc -3'
miRNA:   3'- gucAGA-UCGAUC-GCCGAGCGCcGGCA- -5'
15664 3' -59.5 NC_004065.1 + 22263 0.66 0.838159
Target:  5'- gGGUUaguGCcGGCGGCgaugaccgucggCGUGGCCGUg -3'
miRNA:   3'- gUCAGau-CGaUCGCCGa-----------GCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 24271 0.7 0.609162
Target:  5'- uCGGUg-AGCUcaCGGCUCGCGGCCc- -3'
miRNA:   3'- -GUCAgaUCGAucGCCGAGCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 24741 0.69 0.687478
Target:  5'- gAGUCUGGCgcacucguugGGCGGCccccCGuUGGCCGg -3'
miRNA:   3'- gUCAGAUCGa---------UCGCCGa---GC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 29969 0.67 0.789856
Target:  5'- cCGGUgCUGGCggcGGCGGCg-GCGGCaGUg -3'
miRNA:   3'- -GUCA-GAUCGa--UCGCCGagCGCCGgCA- -5'
15664 3' -59.5 NC_004065.1 + 31294 0.66 0.847473
Target:  5'- aCAGacucCUGGCgcucGGCagGGC-CGCGGCCGa -3'
miRNA:   3'- -GUCa---GAUCGa---UCG--CCGaGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 31376 0.66 0.847473
Target:  5'- gAGUCUgaucGGCcGGCGGaucCUCuCGGCCGg -3'
miRNA:   3'- gUCAGA----UCGaUCGCC---GAGcGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 50734 0.67 0.772106
Target:  5'- aGGUCUAuGCacGGCGGCUCcguGUGGUCGc -3'
miRNA:   3'- gUCAGAU-CGa-UCGCCGAG---CGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 55777 0.71 0.579862
Target:  5'- gCGGUCUcGGCgccgAGCaGGCgaUCGCGGCUGa -3'
miRNA:   3'- -GUCAGA-UCGa---UCG-CCG--AGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 59969 0.68 0.716357
Target:  5'- -----aGGUUGGCGGCuUCGuCGGCCGa -3'
miRNA:   3'- gucagaUCGAUCGCCG-AGC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 62324 0.67 0.807083
Target:  5'- gCAGUCgaGGCUguagAGgGGCUCG-GGCUGg -3'
miRNA:   3'- -GUCAGa-UCGA----UCgCCGAGCgCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 66160 0.69 0.685537
Target:  5'- cCAG-CUGGCcgAGCGGUUCGCGGaacacugcgcgaCGUg -3'
miRNA:   3'- -GUCaGAUCGa-UCGCCGAGCGCCg-----------GCA- -5'
15664 3' -59.5 NC_004065.1 + 68137 0.66 0.855037
Target:  5'- gGGUCUgucggacgAGCUGgacGCGGUgaUCGCGGCgGc -3'
miRNA:   3'- gUCAGA--------UCGAU---CGCCG--AGCGCCGgCa -5'
15664 3' -59.5 NC_004065.1 + 68768 0.66 0.823727
Target:  5'- gCGG-CgguGCUGGCGGCcuUCaaGGCCGUg -3'
miRNA:   3'- -GUCaGau-CGAUCGCCG--AGcgCCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.