Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15664 | 5' | -53.5 | NC_004065.1 | + | 132818 | 0.65 | 0.988037 |
Target: 5'- aCGGCGUAGgGCUucuugaugcucccgGGCGGCGAGUCGu- -3' miRNA: 3'- -GUUGUAUCgUGG--------------CUGUCGCUCGGUcu -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 87805 | 0.66 | 0.986973 |
Target: 5'- --gUAUGGgGCgGugGacGCGAGCCAGGg -3' miRNA: 3'- guuGUAUCgUGgCugU--CGCUCGGUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 20323 | 0.66 | 0.979437 |
Target: 5'- aGACGgcAGUGCCG-CGGCaGAGCCGGu -3' miRNA: 3'- gUUGUa-UCGUGGCuGUCG-CUCGGUCu -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 116623 | 0.66 | 0.983529 |
Target: 5'- gGAUGU-GCACCGuCAGCGAGgUCGGc -3' miRNA: 3'- gUUGUAuCGUGGCuGUCGCUC-GGUCu -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 166457 | 0.66 | 0.985328 |
Target: 5'- gCAGCAcgAGCACgGACAGCacGGGCgGuGAc -3' miRNA: 3'- -GUUGUa-UCGUGgCUGUCG--CUCGgU-CU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 211464 | 0.66 | 0.986973 |
Target: 5'- gAAUAUcGCAgccguUCGGCcauGCGAGCCAGGc -3' miRNA: 3'- gUUGUAuCGU-----GGCUGu--CGCUCGGUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 95764 | 0.66 | 0.979437 |
Target: 5'- -cGCAUGcGCAUCGACAGUGAcUCAGc -3' miRNA: 3'- guUGUAU-CGUGGCUGUCGCUcGGUCu -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 24524 | 0.66 | 0.979437 |
Target: 5'- cCAAgAUGGCGgCGGCAGCGAcgacgGCagCGGAg -3' miRNA: 3'- -GUUgUAUCGUgGCUGUCGCU-----CG--GUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 77042 | 0.66 | 0.979437 |
Target: 5'- gGugAUAGCguucGCCGucgcgGCGGCGAugcGCCGGAc -3' miRNA: 3'- gUugUAUCG----UGGC-----UGUCGCU---CGGUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 165246 | 0.66 | 0.979437 |
Target: 5'- aGACGgcAGCAUCGGCAGaagaccCGAGCgAGAc -3' miRNA: 3'- gUUGUa-UCGUGGCUGUC------GCUCGgUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 43153 | 0.66 | 0.981568 |
Target: 5'- aGACAcgcGCACgGACGGCGGGaacggCAGAc -3' miRNA: 3'- gUUGUau-CGUGgCUGUCGCUCg----GUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 90376 | 0.66 | 0.986973 |
Target: 5'- -cGCAc-GCGCCGcACAGCuugGAGCCGGc -3' miRNA: 3'- guUGUauCGUGGC-UGUCG---CUCGGUCu -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 120865 | 0.66 | 0.985328 |
Target: 5'- -uACAUGcGCACCGGCuuGCccgGGGUCAGGg -3' miRNA: 3'- guUGUAU-CGUGGCUGu-CG---CUCGGUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 167157 | 0.66 | 0.981568 |
Target: 5'- -uACGUGuUACCGcGCAGCGAGCCc-- -3' miRNA: 3'- guUGUAUcGUGGC-UGUCGCUCGGucu -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 124952 | 0.66 | 0.986495 |
Target: 5'- -cGCGUuGCG-CGGCAGCGccugcacgaagggcGGCCAGAg -3' miRNA: 3'- guUGUAuCGUgGCUGUCGC--------------UCGGUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 143016 | 0.66 | 0.986973 |
Target: 5'- aCGACGUcGCACCGGCGuCGuuUCGGAg -3' miRNA: 3'- -GUUGUAuCGUGGCUGUcGCucGGUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 124448 | 0.66 | 0.981568 |
Target: 5'- gCGACucgaAGCccGCCGACGGCGcGCCGu- -3' miRNA: 3'- -GUUGua--UCG--UGGCUGUCGCuCGGUcu -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 19853 | 0.66 | 0.981568 |
Target: 5'- gGACGaAGCuGCCGaAUGGCGuGCUAGAg -3' miRNA: 3'- gUUGUaUCG-UGGC-UGUCGCuCGGUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 127654 | 0.66 | 0.981568 |
Target: 5'- -----cGGCGCCGAgGGCG-GCgGGAc -3' miRNA: 3'- guuguaUCGUGGCUgUCGCuCGgUCU- -5' |
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15664 | 5' | -53.5 | NC_004065.1 | + | 224284 | 0.66 | 0.981568 |
Target: 5'- gCAGCGcUAGCgcguuGCCGAuCAGCacgauccccaGGGCCAGGa -3' miRNA: 3'- -GUUGU-AUCG-----UGGCU-GUCG----------CUCGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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