miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 5' -53.5 NC_004065.1 + 167157 0.66 0.981568
Target:  5'- -uACGUGuUACCGcGCAGCGAGCCc-- -3'
miRNA:   3'- guUGUAUcGUGGC-UGUCGCUCGGucu -5'
15664 5' -53.5 NC_004065.1 + 108774 0.66 0.981568
Target:  5'- -cACAUAGCACuCGGC--CGAGCCGu- -3'
miRNA:   3'- guUGUAUCGUG-GCUGucGCUCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 194561 0.66 0.981568
Target:  5'- aGAC-UGGUACCGcUGGCGAcucggcGCCAGAu -3'
miRNA:   3'- gUUGuAUCGUGGCuGUCGCU------CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 224284 0.66 0.981568
Target:  5'- gCAGCGcUAGCgcguuGCCGAuCAGCacgauccccaGGGCCAGGa -3'
miRNA:   3'- -GUUGU-AUCG-----UGGCU-GUCG----------CUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 131851 0.66 0.981568
Target:  5'- uCGGCGU-GCGCCGACAGCaGGUUg-- -3'
miRNA:   3'- -GUUGUAuCGUGGCUGUCGcUCGGucu -5'
15664 5' -53.5 NC_004065.1 + 127654 0.66 0.981568
Target:  5'- -----cGGCGCCGAgGGCG-GCgGGAc -3'
miRNA:   3'- guuguaUCGUGGCUgUCGCuCGgUCU- -5'
15664 5' -53.5 NC_004065.1 + 19853 0.66 0.981568
Target:  5'- gGACGaAGCuGCCGaAUGGCGuGCUAGAg -3'
miRNA:   3'- gUUGUaUCG-UGGC-UGUCGCuCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 124448 0.66 0.981568
Target:  5'- gCGACucgaAGCccGCCGACGGCGcGCCGu- -3'
miRNA:   3'- -GUUGua--UCG--UGGCUGUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 77042 0.66 0.979437
Target:  5'- gGugAUAGCguucGCCGucgcgGCGGCGAugcGCCGGAc -3'
miRNA:   3'- gUugUAUCG----UGGC-----UGUCGCU---CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 95764 0.66 0.979437
Target:  5'- -cGCAUGcGCAUCGACAGUGAcUCAGc -3'
miRNA:   3'- guUGUAU-CGUGGCUGUCGCUcGGUCu -5'
15664 5' -53.5 NC_004065.1 + 20323 0.66 0.979437
Target:  5'- aGACGgcAGUGCCG-CGGCaGAGCCGGu -3'
miRNA:   3'- gUUGUa-UCGUGGCuGUCG-CUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 165246 0.66 0.979437
Target:  5'- aGACGgcAGCAUCGGCAGaagaccCGAGCgAGAc -3'
miRNA:   3'- gUUGUa-UCGUGGCUGUC------GCUCGgUCU- -5'
15664 5' -53.5 NC_004065.1 + 24524 0.66 0.979437
Target:  5'- cCAAgAUGGCGgCGGCAGCGAcgacgGCagCGGAg -3'
miRNA:   3'- -GUUgUAUCGUgGCUGUCGCU-----CG--GUCU- -5'
15664 5' -53.5 NC_004065.1 + 164962 0.67 0.977129
Target:  5'- gCGugGUGGgACCGGCGGCGGcGgCGGc -3'
miRNA:   3'- -GUugUAUCgUGGCUGUCGCU-CgGUCu -5'
15664 5' -53.5 NC_004065.1 + 146859 0.67 0.977129
Target:  5'- aCGGCGUccagGGUGUCGACGGCGuuGCCGGGc -3'
miRNA:   3'- -GUUGUA----UCGUGGCUGUCGCu-CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 94346 0.67 0.977129
Target:  5'- aAACGcAGCGCCGAgcgaaaGGCGAGaggCAGAg -3'
miRNA:   3'- gUUGUaUCGUGGCUg-----UCGCUCg--GUCU- -5'
15664 5' -53.5 NC_004065.1 + 196275 0.67 0.977129
Target:  5'- aCGugGUGGC-CCGAgAGCGuGCUAa- -3'
miRNA:   3'- -GUugUAUCGuGGCUgUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 22265 0.67 0.977129
Target:  5'- cCGGguUAGUGCCGGCGGCGAugaccGUCGGc -3'
miRNA:   3'- -GUUguAUCGUGGCUGUCGCU-----CGGUCu -5'
15664 5' -53.5 NC_004065.1 + 99359 0.67 0.977129
Target:  5'- cCGACG-AGCGuuGGCAGCGAcggcGCCGa- -3'
miRNA:   3'- -GUUGUaUCGUggCUGUCGCU----CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 34110 0.67 0.977129
Target:  5'- gCGAUAaAGCGCCGGCAGaaCGAGuCCGc- -3'
miRNA:   3'- -GUUGUaUCGUGGCUGUC--GCUC-GGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.