miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15665 3' -57 NC_004065.1 + 150180 0.67 0.89488
Target:  5'- aGCCCGccUCCuGCCgAGCCGCGcGCCccUCa -3'
miRNA:   3'- gUGGGC--AGG-UGG-UCGGUGCaUGGa-AG- -5'
15665 3' -57 NC_004065.1 + 120883 0.67 0.89488
Target:  5'- aGCCCGUCgGCCGcggcggacGCCACGaGCUa-- -3'
miRNA:   3'- gUGGGCAGgUGGU--------CGGUGCaUGGaag -5'
15665 3' -57 NC_004065.1 + 131507 0.67 0.907202
Target:  5'- gCGCagaaCGUCCGCC-GCCACGgagacgACCa-- -3'
miRNA:   3'- -GUGg---GCAGGUGGuCGGUGCa-----UGGaag -5'
15665 3' -57 NC_004065.1 + 138546 0.67 0.913033
Target:  5'- gGCCgCGUCCA-CGGCCucccUGUACCUg- -3'
miRNA:   3'- gUGG-GCAGGUgGUCGGu---GCAUGGAag -5'
15665 3' -57 NC_004065.1 + 138805 0.66 0.918643
Target:  5'- uCGCCgucaGUCCGCC-GCCGCucGUGCCg-- -3'
miRNA:   3'- -GUGGg---CAGGUGGuCGGUG--CAUGGaag -5'
15665 3' -57 NC_004065.1 + 76067 0.66 0.924029
Target:  5'- uCAUCUGUCguCguGCCAgGUGCCUc- -3'
miRNA:   3'- -GUGGGCAGguGguCGGUgCAUGGAag -5'
15665 3' -57 NC_004065.1 + 33250 0.66 0.928685
Target:  5'- gACCuCGU-CACCGGCCugGUccgcgagGCCUccgUCa -3'
miRNA:   3'- gUGG-GCAgGUGGUCGGugCA-------UGGA---AG- -5'
15665 3' -57 NC_004065.1 + 50017 0.68 0.867685
Target:  5'- uGCCUGUCCcgACCuGCUGCGcGCCgUCa -3'
miRNA:   3'- gUGGGCAGG--UGGuCGGUGCaUGGaAG- -5'
15665 3' -57 NC_004065.1 + 137906 0.68 0.867685
Target:  5'- aGCCCuUCCaacgcaaccuGCUAGcCCACGUGCuCUUCu -3'
miRNA:   3'- gUGGGcAGG----------UGGUC-GGUGCAUG-GAAG- -5'
15665 3' -57 NC_004065.1 + 162729 0.78 0.330908
Target:  5'- -cCUCGUCCugGCCGGCCGCGcgagGCCUUCg -3'
miRNA:   3'- guGGGCAGG--UGGUCGGUGCa---UGGAAG- -5'
15665 3' -57 NC_004065.1 + 23869 0.77 0.391718
Target:  5'- cCGCCCGUCCACCcGCCugcccgccucaccGCcUGCCUUCc -3'
miRNA:   3'- -GUGGGCAGGUGGuCGG-------------UGcAUGGAAG- -5'
15665 3' -57 NC_004065.1 + 72210 0.76 0.434654
Target:  5'- uGCCCGgcUCCACCGGCgGCGUcGCCUcCg -3'
miRNA:   3'- gUGGGC--AGGUGGUCGgUGCA-UGGAaG- -5'
15665 3' -57 NC_004065.1 + 61515 0.72 0.633616
Target:  5'- aGCCCGUCgAC--GCCGCGcagGCCUUCg -3'
miRNA:   3'- gUGGGCAGgUGguCGGUGCa--UGGAAG- -5'
15665 3' -57 NC_004065.1 + 75113 0.71 0.70252
Target:  5'- uGCCCGUCUACCAccGCCGCcucaACCUg- -3'
miRNA:   3'- gUGGGCAGGUGGU--CGGUGca--UGGAag -5'
15665 3' -57 NC_004065.1 + 189152 0.71 0.721827
Target:  5'- gACCCG-CgCACCuGCCGCGUauGCCUg- -3'
miRNA:   3'- gUGGGCaG-GUGGuCGGUGCA--UGGAag -5'
15665 3' -57 NC_004065.1 + 135315 0.7 0.768684
Target:  5'- gGCCCGcUCCGCgGcuGCCGCGUacGCCUg- -3'
miRNA:   3'- gUGGGC-AGGUGgU--CGGUGCA--UGGAag -5'
15665 3' -57 NC_004065.1 + 89606 0.7 0.777747
Target:  5'- -uCCCGgCCugCGGCCuguCGUGCCUc- -3'
miRNA:   3'- guGGGCaGGugGUCGGu--GCAUGGAag -5'
15665 3' -57 NC_004065.1 + 23831 0.7 0.786687
Target:  5'- -nCCUGUUCACCAGCC-CGccUGCCUg- -3'
miRNA:   3'- guGGGCAGGUGGUCGGuGC--AUGGAag -5'
15665 3' -57 NC_004065.1 + 134204 0.69 0.792869
Target:  5'- uGCCCGUCCGCgggucuCGGCCGUGUGagaacauagucaguCCUUCg -3'
miRNA:   3'- gUGGGCAGGUG------GUCGGUGCAU--------------GGAAG- -5'
15665 3' -57 NC_004065.1 + 162080 0.68 0.837323
Target:  5'- -cCCCGUCCGCCcGCC-CGU-CCgUCc -3'
miRNA:   3'- guGGGCAGGUGGuCGGuGCAuGGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.