miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15665 3' -57 NC_004065.1 + 139045 0.67 0.89488
Target:  5'- -gUCCGUCCGCCAGagguuuuccgaCCgcaGCGUGCCcgUCu -3'
miRNA:   3'- guGGGCAGGUGGUC-----------GG---UGCAUGGa-AG- -5'
15665 3' -57 NC_004065.1 + 65248 0.67 0.89488
Target:  5'- aCAUCCGcaugaucucCCugCAcGCCACGUACCg-- -3'
miRNA:   3'- -GUGGGCa--------GGugGU-CGGUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 120883 0.67 0.89488
Target:  5'- aGCCCGUCgGCCGcggcggacGCCACGaGCUa-- -3'
miRNA:   3'- gUGGGCAGgUGGU--------CGGUGCaUGGaag -5'
15665 3' -57 NC_004065.1 + 150180 0.67 0.89488
Target:  5'- aGCCCGccUCCuGCCgAGCCGCGcGCCccUCa -3'
miRNA:   3'- gUGGGC--AGG-UGG-UCGGUGCaUGGa-AG- -5'
15665 3' -57 NC_004065.1 + 220561 0.67 0.892956
Target:  5'- aGCCgGUCUccucGCCAacgagacguguuucGCCACGUGCCg-- -3'
miRNA:   3'- gUGGgCAGG----UGGU--------------CGGUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 48007 0.67 0.888395
Target:  5'- cCACCCcUCCugcCCGGCCAUG-GCCUc- -3'
miRNA:   3'- -GUGGGcAGGu--GGUCGGUGCaUGGAag -5'
15665 3' -57 NC_004065.1 + 77664 0.67 0.888395
Target:  5'- gCGCCCGggUCACC-GCCAUGUGCg--- -3'
miRNA:   3'- -GUGGGCa-GGUGGuCGGUGCAUGgaag -5'
15665 3' -57 NC_004065.1 + 163579 0.67 0.887734
Target:  5'- gCugCCGUCCGCCaccagAGUCAagaggcuggcgccCGUGCCgUCg -3'
miRNA:   3'- -GugGGCAGGUGG-----UCGGU-------------GCAUGGaAG- -5'
15665 3' -57 NC_004065.1 + 147140 0.67 0.887734
Target:  5'- -cCCCGUCUGCCgcaucaccguGGCCaugagcgGCGUGCuCUUCg -3'
miRNA:   3'- guGGGCAGGUGG----------UCGG-------UGCAUG-GAAG- -5'
15665 3' -57 NC_004065.1 + 65954 0.67 0.881698
Target:  5'- uGCgCGUCCACCAGCuCGCacGCCcgCg -3'
miRNA:   3'- gUGgGCAGGUGGUCG-GUGcaUGGaaG- -5'
15665 3' -57 NC_004065.1 + 115451 0.67 0.881698
Target:  5'- -cCCCGUCgCGgCGGCCACG-GCCg-- -3'
miRNA:   3'- guGGGCAG-GUgGUCGGUGCaUGGaag -5'
15665 3' -57 NC_004065.1 + 97206 0.68 0.874793
Target:  5'- gCGCCUGUagGCCAGCCugGggAUgUUCg -3'
miRNA:   3'- -GUGGGCAggUGGUCGGugCa-UGgAAG- -5'
15665 3' -57 NC_004065.1 + 112561 0.68 0.874793
Target:  5'- aCACCUuccuccuucuuGUCCAUgGGCgGCGUGCUgcgUCg -3'
miRNA:   3'- -GUGGG-----------CAGGUGgUCGgUGCAUGGa--AG- -5'
15665 3' -57 NC_004065.1 + 115994 0.68 0.874793
Target:  5'- gCGCUCGUCCGCCGacgugcGCCGCGgggGCagcUCu -3'
miRNA:   3'- -GUGGGCAGGUGGU------CGGUGCa--UGga-AG- -5'
15665 3' -57 NC_004065.1 + 127857 0.68 0.867685
Target:  5'- -cCUCGUCUGCCucGCCAgGUACCUc- -3'
miRNA:   3'- guGGGCAGGUGGu-CGGUgCAUGGAag -5'
15665 3' -57 NC_004065.1 + 187630 0.68 0.867685
Target:  5'- -uUCCGUCaucaCAUCGGCCACGUACa-UCa -3'
miRNA:   3'- guGGGCAG----GUGGUCGGUGCAUGgaAG- -5'
15665 3' -57 NC_004065.1 + 50017 0.68 0.867685
Target:  5'- uGCCUGUCCcgACCuGCUGCGcGCCgUCa -3'
miRNA:   3'- gUGGGCAGG--UGGuCGGUGCaUGGaAG- -5'
15665 3' -57 NC_004065.1 + 137906 0.68 0.867685
Target:  5'- aGCCCuUCCaacgcaaccuGCUAGcCCACGUGCuCUUCu -3'
miRNA:   3'- gUGGGcAGG----------UGGUC-GGUGCAUG-GAAG- -5'
15665 3' -57 NC_004065.1 + 7321 0.68 0.867685
Target:  5'- aACCucuaCGUCCGCCGGCUgAUGUAUCUg- -3'
miRNA:   3'- gUGG----GCAGGUGGUCGG-UGCAUGGAag -5'
15665 3' -57 NC_004065.1 + 209731 0.68 0.852878
Target:  5'- uCACCaaaGUCCACCacacgAGCgCACGUAUCa-- -3'
miRNA:   3'- -GUGGg--CAGGUGG-----UCG-GUGCAUGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.