miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15665 5' -48.1 NC_004065.1 + 186845 0.66 0.999948
Target:  5'- cGGGAguagcGUACGGAgcGCcgCCGUccucggugUAGACg -3'
miRNA:   3'- -CCCU-----UAUGUCUacCGuaGGCA--------AUCUG- -5'
15665 5' -48.1 NC_004065.1 + 184903 0.66 0.999931
Target:  5'- cGGGAGcgggcgccCGGGUGGCucgggagcggCCGggAGACg -3'
miRNA:   3'- -CCCUUau------GUCUACCGua--------GGCaaUCUG- -5'
15665 5' -48.1 NC_004065.1 + 176358 0.66 0.99991
Target:  5'- aGGGAG---AGAUGGUGUCCuugcGGACg -3'
miRNA:   3'- -CCCUUaugUCUACCGUAGGcaa-UCUG- -5'
15665 5' -48.1 NC_004065.1 + 93681 0.67 0.999848
Target:  5'- cGGGGAUcCGGGUGGgGUgCG--GGGCg -3'
miRNA:   3'- -CCCUUAuGUCUACCgUAgGCaaUCUG- -5'
15665 5' -48.1 NC_004065.1 + 108334 0.67 0.999753
Target:  5'- cGGGGcgACGGG-GGCAUCUGc-AGAUc -3'
miRNA:   3'- -CCCUuaUGUCUaCCGUAGGCaaUCUG- -5'
15665 5' -48.1 NC_004065.1 + 30132 0.67 0.999687
Target:  5'- gGGGAggGCGGGUGGCGgagCGaccGGACc -3'
miRNA:   3'- -CCCUuaUGUCUACCGUag-GCaa-UCUG- -5'
15665 5' -48.1 NC_004065.1 + 14954 0.67 0.99968
Target:  5'- uGGAucugAUGGGUGGCGguguggaUCCGUUGGGu -3'
miRNA:   3'- cCCUua--UGUCUACCGU-------AGGCAAUCUg -5'
15665 5' -48.1 NC_004065.1 + 154053 0.67 0.999608
Target:  5'- uGGAggAUGGA-GGCAUCCGUgucccUGGAUc -3'
miRNA:   3'- cCCUuaUGUCUaCCGUAGGCA-----AUCUG- -5'
15665 5' -48.1 NC_004065.1 + 6791 0.68 0.999393
Target:  5'- -cGAGUgACGGGUcGCAUCCGUUAGcCu -3'
miRNA:   3'- ccCUUA-UGUCUAcCGUAGGCAAUCuG- -5'
15665 5' -48.1 NC_004065.1 + 211305 0.68 0.999393
Target:  5'- aGGAugaGCGGGUGGaCAUCUGUcaAGACc -3'
miRNA:   3'- cCCUua-UGUCUACC-GUAGGCAa-UCUG- -5'
15665 5' -48.1 NC_004065.1 + 101709 0.68 0.999251
Target:  5'- aGGGGGaACAGGUGGUGcUCCGUcGGu- -3'
miRNA:   3'- -CCCUUaUGUCUACCGU-AGGCAaUCug -5'
15665 5' -48.1 NC_004065.1 + 113424 0.69 0.998369
Target:  5'- aGGGAGcugcGCAGAgcGGCggCCGggGGGCc -3'
miRNA:   3'- -CCCUUa---UGUCUa-CCGuaGGCaaUCUG- -5'
15665 5' -48.1 NC_004065.1 + 109136 0.69 0.998045
Target:  5'- gGGGAcgGCGGGUgacGGCGguUCCGUc-GACa -3'
miRNA:   3'- -CCCUuaUGUCUA---CCGU--AGGCAauCUG- -5'
15665 5' -48.1 NC_004065.1 + 200628 0.69 0.998045
Target:  5'- -cGAAUACcGAUGGCGUCgCGcucgAGGCg -3'
miRNA:   3'- ccCUUAUGuCUACCGUAG-GCaa--UCUG- -5'
15665 5' -48.1 NC_004065.1 + 22797 0.71 0.993932
Target:  5'- uGGggUugAGGUGGgAUCCGgaacggGGAa -3'
miRNA:   3'- cCCuuAugUCUACCgUAGGCaa----UCUg -5'
15665 5' -48.1 NC_004065.1 + 200504 0.72 0.988011
Target:  5'- uGGGAgacGUACGGG-GGCGcUCCGgcGGGCc -3'
miRNA:   3'- -CCCU---UAUGUCUaCCGU-AGGCaaUCUG- -5'
15665 5' -48.1 NC_004065.1 + 29600 0.72 0.986417
Target:  5'- gGGGAGUccccgaccagAUAGAUGGCGUCgucgaCGUcGGGCg -3'
miRNA:   3'- -CCCUUA----------UGUCUACCGUAG-----GCAaUCUG- -5'
15665 5' -48.1 NC_004065.1 + 6902 1.15 0.011731
Target:  5'- cGGGAAUACAGAUGGCAUCCGUUAGACa -3'
miRNA:   3'- -CCCUUAUGUCUACCGUAGGCAAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.