Results 81 - 100 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 87218 | 0.71 | 0.912185 |
Target: 5'- -uCUGGGCGAGggGCGcuucgggggcGACGAGCGa- -3' miRNA: 3'- guGGCUUGCUCuuCGU----------CUGCUCGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 128813 | 0.71 | 0.928974 |
Target: 5'- gACCG-ACGuGAAgGCGGACGAGCc-- -3' miRNA: 3'- gUGGCuUGCuCUU-CGUCUGCUCGuac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 176583 | 0.71 | 0.928449 |
Target: 5'- aCGCUGGgauaGCGgaaguguggaauuAGAGGCAGACGAGgAUGa -3' miRNA: 3'- -GUGGCU----UGC-------------UCUUCGUCUGCUCgUAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 41489 | 0.71 | 0.928974 |
Target: 5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3' miRNA: 3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 122402 | 0.72 | 0.899801 |
Target: 5'- ---aGAGCGAGAuGCAGACGuugcGCAUGu -3' miRNA: 3'- guggCUUGCUCUuCGUCUGCu---CGUAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 76998 | 0.72 | 0.886487 |
Target: 5'- uGCUGGAgGAGGAGgAGGCG-GCGUGc -3' miRNA: 3'- gUGGCUUgCUCUUCgUCUGCuCGUAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 88718 | 0.72 | 0.879489 |
Target: 5'- uCGCgGcGCGAGcGGCGGAUGAGCAc- -3' miRNA: 3'- -GUGgCuUGCUCuUCGUCUGCUCGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 85370 | 0.72 | 0.899801 |
Target: 5'- aACCGAACGAGAucAGUAGACacAGaCAUGc -3' miRNA: 3'- gUGGCUUGCUCU--UCGUCUGc-UC-GUAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 138432 | 0.72 | 0.906111 |
Target: 5'- cCGCCGugcguccuCGAGGggucggGGCGGGCGAGCAg- -3' miRNA: 3'- -GUGGCuu------GCUCU------UCGUCUGCUCGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 34615 | 0.72 | 0.906111 |
Target: 5'- aGCCGAGCGgcGGAGGguGGCGuGCuUGc -3' miRNA: 3'- gUGGCUUGC--UCUUCguCUGCuCGuAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 121417 | 0.73 | 0.841293 |
Target: 5'- cCGCCGGACGGcGGcuucAGCGGAUGGGCGc- -3' miRNA: 3'- -GUGGCUUGCU-CU----UCGUCUGCUCGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 226105 | 0.73 | 0.84934 |
Target: 5'- aGCCGAACGAuucgaAAGCAGGCGGgggucgccGCGUGg -3' miRNA: 3'- gUGGCUUGCUc----UUCGUCUGCU--------CGUAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 74041 | 0.73 | 0.864836 |
Target: 5'- uCGCCGGaguGCGAGAcgaGGCGGAgGAGCu-- -3' miRNA: 3'- -GUGGCU---UGCUCU---UCGUCUgCUCGuac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 146385 | 0.73 | 0.84934 |
Target: 5'- uGCgGAugGAGAAGguGAUGucGCGUGa -3' miRNA: 3'- gUGgCUugCUCUUCguCUGCu-CGUAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 150743 | 0.73 | 0.84934 |
Target: 5'- gGCCGAGCGGGAgaaGGCGGuCGAuGCGg- -3' miRNA: 3'- gUGGCUUGCUCU---UCGUCuGCU-CGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 150325 | 0.73 | 0.864836 |
Target: 5'- aGCUGAugGAGAAGCgGGACcGGCAg- -3' miRNA: 3'- gUGGCUugCUCUUCG-UCUGcUCGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 130909 | 0.75 | 0.780051 |
Target: 5'- uGCCG-ACGuuGGGCAuGACGGGCGUGg -3' miRNA: 3'- gUGGCuUGCucUUCGU-CUGCUCGUAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 186016 | 0.75 | 0.788354 |
Target: 5'- gAUCGAGCGAGcgagcgaacgaccGGGCGGGCGGGCGa- -3' miRNA: 3'- gUGGCUUGCUC-------------UUCGUCUGCUCGUac -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 23567 | 0.75 | 0.780051 |
Target: 5'- gGgCGGGCGGGcAGGCAGGCGGGCugGUGa -3' miRNA: 3'- gUgGCUUGCUC-UUCGUCUGCUCG--UAC- -5' |
|||||||
15666 | 3' | -52 | NC_004065.1 | + | 116344 | 0.76 | 0.702288 |
Target: 5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3' miRNA: 3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home