Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 76998 | 0.72 | 0.886487 |
Target: 5'- uGCUGGAgGAGGAGgAGGCG-GCGUGc -3' miRNA: 3'- gUGGCUUgCUCUUCgUCUGCuCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 85370 | 0.72 | 0.899801 |
Target: 5'- aACCGAACGAGAucAGUAGACacAGaCAUGc -3' miRNA: 3'- gUGGCUUGCUCU--UCGUCUGc-UC-GUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 138432 | 0.72 | 0.906111 |
Target: 5'- cCGCCGugcguccuCGAGGggucggGGCGGGCGAGCAg- -3' miRNA: 3'- -GUGGCuu------GCUCU------UCGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 118887 | 0.71 | 0.916295 |
Target: 5'- aCGCCGAggaggaggaagaagACGAGGAGgAcGACGAGgAUGa -3' miRNA: 3'- -GUGGCU--------------UGCUCUUCgU-CUGCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 87218 | 0.71 | 0.912185 |
Target: 5'- -uCUGGGCGAGggGCGcuucgggggcGACGAGCGa- -3' miRNA: 3'- guGGCUUGCUCuuCGU----------CUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 176583 | 0.71 | 0.928449 |
Target: 5'- aCGCUGGgauaGCGgaaguguggaauuAGAGGCAGACGAGgAUGa -3' miRNA: 3'- -GUGGCU----UGC-------------UCUUCGUCUGCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 41489 | 0.71 | 0.928974 |
Target: 5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3' miRNA: 3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 133947 | 0.71 | 0.928974 |
Target: 5'- uCACaCGGcCGAGAcccGCGGACGGGCAa- -3' miRNA: 3'- -GUG-GCUuGCUCUu--CGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 128813 | 0.71 | 0.928974 |
Target: 5'- gACCG-ACGuGAAgGCGGACGAGCc-- -3' miRNA: 3'- gUGGCuUGCuCUU-CGUCUGCUCGuac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 126579 | 0.71 | 0.912185 |
Target: 5'- aCACgGugggcGGCGGGGAGCGccuGGCGGGCGUGa -3' miRNA: 3'- -GUGgC-----UUGCUCUUCGU---CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 71962 | 0.7 | 0.938491 |
Target: 5'- cCGCCGGugGAGccGGGCAGcccggagGCGAcGCAUGc -3' miRNA: 3'- -GUGGCUugCUC--UUCGUC-------UGCU-CGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 81203 | 0.7 | 0.95983 |
Target: 5'- gGCCGAGCGAG-GGCAuGuuGGGCAa- -3' miRNA: 3'- gUGGCUUGCUCuUCGU-CugCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 119990 | 0.7 | 0.956118 |
Target: 5'- gCGCCGAGCGGGuggaagaacacGGCGGGCGGuGCcgGc -3' miRNA: 3'- -GUGGCUUGCUCu----------UCGUCUGCU-CGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 51061 | 0.7 | 0.95983 |
Target: 5'- aCugCGAAcccCGAGGAGUAGAuuCGAGgAUGa -3' miRNA: 3'- -GugGCUU---GCUCUUCGUCU--GCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 111505 | 0.7 | 0.952179 |
Target: 5'- gCGCCG-ACGA--GGCAGAggcgauCGAGCGUGa -3' miRNA: 3'- -GUGGCuUGCUcuUCGUCU------GCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 107041 | 0.7 | 0.938968 |
Target: 5'- aACUGAACGAGAgcAGCGuGGCGAGaCGg- -3' miRNA: 3'- gUGGCUUGCUCU--UCGU-CUGCUC-GUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 19132 | 0.7 | 0.94801 |
Target: 5'- gGCCGuucgGgGGGGAGCGGGCGuGCcgGg -3' miRNA: 3'- gUGGCu---UgCUCUUCGUCUGCuCGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 146104 | 0.7 | 0.94801 |
Target: 5'- aCGCCGucgGAGAAGaucucGACGGGCGUGa -3' miRNA: 3'- -GUGGCuugCUCUUCgu---CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 211353 | 0.7 | 0.94801 |
Target: 5'- aACCGAgGCGAGAcGGCGGGC-AGCAg- -3' miRNA: 3'- gUGGCU-UGCUCU-UCGUCUGcUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 222979 | 0.7 | 0.94801 |
Target: 5'- -cCCGGGCGAGGAGCuccuGACGAucgaGCcgGu -3' miRNA: 3'- guGGCUUGCUCUUCGu---CUGCU----CGuaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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