miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 196500 0.68 0.98571
Target:  5'- gCGCCGAACGuGucgauGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCuCuucguCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 101153 0.68 0.98394
Target:  5'- uGCCGGACGAucAGCAGuGCGcGGCGg- -3'
miRNA:   3'- gUGGCUUGCUcuUCGUC-UGC-UCGUac -5'
15666 3' -52 NC_004065.1 + 105575 0.68 0.982008
Target:  5'- uCAUCGAGgGAacaGAGguGGCGAGCAUc -3'
miRNA:   3'- -GUGGCUUgCUc--UUCguCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 111214 0.68 0.982008
Target:  5'- aCGgCGAAgGuGGAGguGACGAGgAUGu -3'
miRNA:   3'- -GUgGCUUgCuCUUCguCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 197405 0.68 0.98394
Target:  5'- -cCUGGuCGAGAGGCGcgccGGCGAGCGUc -3'
miRNA:   3'- guGGCUuGCUCUUCGU----CUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 20722 0.68 0.98554
Target:  5'- gACUGAAgGAGGcccggccGGCugcuGGCGGGCGUGc -3'
miRNA:   3'- gUGGCUUgCUCU-------UCGu---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 54507 0.68 0.98571
Target:  5'- uCGCCGGACGGGAGau-GACGAuGUGUGc -3'
miRNA:   3'- -GUGGCUUGCUCUUcguCUGCU-CGUAC- -5'
15666 3' -52 NC_004065.1 + 42981 0.68 0.98571
Target:  5'- cCGCCGcgcuGCGAucacuGggGCGGAgGAGCGc- -3'
miRNA:   3'- -GUGGCu---UGCU-----CuuCGUCUgCUCGUac -5'
15666 3' -52 NC_004065.1 + 59566 0.68 0.98571
Target:  5'- aGCCGAugGCGAcGGGCAG-CGAcugcGCAUGg -3'
miRNA:   3'- gUGGCU--UGCUcUUCGUCuGCU----CGUAC- -5'
15666 3' -52 NC_004065.1 + 20849 0.67 0.9888
Target:  5'- gCGCCGGuccGCGAGcGGUagguagagAGGCGAGCGa- -3'
miRNA:   3'- -GUGGCU---UGCUCuUCG--------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 69229 0.67 0.987327
Target:  5'- uCGCUGAACGAGAucaagGGCGuGAagaugcugaaGAGCGUGc -3'
miRNA:   3'- -GUGGCUUGCUCU-----UCGU-CUg---------CUCGUAC- -5'
15666 3' -52 NC_004065.1 + 227873 0.67 0.987327
Target:  5'- --aCGGACGGGGggagacGGCGGACGAGgAUc -3'
miRNA:   3'- gugGCUUGCUCU------UCGUCUGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 224528 0.67 0.9888
Target:  5'- gCGCUGGAuCGuGcuGCGGGCGAGaCGUGg -3'
miRNA:   3'- -GUGGCUU-GCuCuuCGUCUGCUC-GUAC- -5'
15666 3' -52 NC_004065.1 + 96546 0.67 0.98935
Target:  5'- aGCUGGACGAGGAGuCGcuggacucguccgccGACGAGCc-- -3'
miRNA:   3'- gUGGCUUGCUCUUC-GU---------------CUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 74843 0.67 0.991228
Target:  5'- gACCGAgggGCGcAGGuugaggcggcgguGGUAGACGGGCAg- -3'
miRNA:   3'- gUGGCU---UGC-UCU-------------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 81863 0.67 0.992116
Target:  5'- -cCCGAugGuGAagagaugguucucgGGCAcGGCGGGCGUGc -3'
miRNA:   3'- guGGCUugCuCU--------------UCGU-CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 135128 0.67 0.992431
Target:  5'- uCACCGGGCGGGc-GCGG-CGGGUgAUGa -3'
miRNA:   3'- -GUGGCUUGCUCuuCGUCuGCUCG-UAC- -5'
15666 3' -52 NC_004065.1 + 3803 0.67 0.987327
Target:  5'- -uCCGGAUGAGGAGaugcugcggaAGAUGAGCGa- -3'
miRNA:   3'- guGGCUUGCUCUUCg---------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 126307 0.67 0.987172
Target:  5'- uCACCGAGaCGcAGAuggacgugcugaaGGUGGGCGAGCGg- -3'
miRNA:   3'- -GUGGCUU-GC-UCU-------------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 184851 0.67 0.992431
Target:  5'- gGCCGAGggauCGAGucGAGCGGGCG-GCGg- -3'
miRNA:   3'- gUGGCUU----GCUC--UUCGUCUGCuCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.