miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 184851 0.67 0.992431
Target:  5'- gGCCGAGggauCGAGucGAGCGGGCG-GCGg- -3'
miRNA:   3'- gUGGCUU----GCUC--UUCGUCUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 96546 0.67 0.98935
Target:  5'- aGCUGGACGAGGAGuCGcuggacucguccgccGACGAGCc-- -3'
miRNA:   3'- gUGGCUUGCUCUUC-GU---------------CUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 224528 0.67 0.9888
Target:  5'- gCGCUGGAuCGuGcuGCGGGCGAGaCGUGg -3'
miRNA:   3'- -GUGGCUU-GCuCuuCGUCUGCUC-GUAC- -5'
15666 3' -52 NC_004065.1 + 20849 0.67 0.9888
Target:  5'- gCGCCGGuccGCGAGcGGUagguagagAGGCGAGCGa- -3'
miRNA:   3'- -GUGGCU---UGCUCuUCG--------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 69229 0.67 0.987327
Target:  5'- uCGCUGAACGAGAucaagGGCGuGAagaugcugaaGAGCGUGc -3'
miRNA:   3'- -GUGGCUUGCUCU-----UCGU-CUg---------CUCGUAC- -5'
15666 3' -52 NC_004065.1 + 227873 0.67 0.987327
Target:  5'- --aCGGACGGGGggagacGGCGGACGAGgAUc -3'
miRNA:   3'- gugGCUUGCUCU------UCGUCUGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 3803 0.67 0.987327
Target:  5'- -uCCGGAUGAGGAGaugcugcggaAGAUGAGCGa- -3'
miRNA:   3'- guGGCUUGCUCUUCg---------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 81863 0.67 0.992116
Target:  5'- -cCCGAugGuGAagagaugguucucgGGCAcGGCGGGCGUGc -3'
miRNA:   3'- guGGCUugCuCU--------------UCGU-CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 110181 0.66 0.993768
Target:  5'- gACCuccCGGGAcgcgacggcggccgcGGCGGACGAGCcgGg -3'
miRNA:   3'- gUGGcuuGCUCU---------------UCGUCUGCUCGuaC- -5'
15666 3' -52 NC_004065.1 + 223124 0.66 0.994279
Target:  5'- uCGCCGGuuucACGGGGauGGCGGACGcGCu-- -3'
miRNA:   3'- -GUGGCU----UGCUCU--UCGUCUGCuCGuac -5'
15666 3' -52 NC_004065.1 + 113111 0.66 0.994279
Target:  5'- uGCCGGACGAGcuGCuguccGACG-GCAa- -3'
miRNA:   3'- gUGGCUUGCUCuuCGu----CUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 56599 0.66 0.995745
Target:  5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3'
miRNA:   3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 82380 0.66 0.996354
Target:  5'- aCGCUGAAgGGGGAGCAGGgcuCGGGgAc- -3'
miRNA:   3'- -GUGGCUUgCUCUUCGUCU---GCUCgUac -5'
15666 3' -52 NC_004065.1 + 67142 0.66 0.996354
Target:  5'- gCGCCuGGACGcGAucGCGGACGAGaagGUGa -3'
miRNA:   3'- -GUGG-CUUGCuCUu-CGUCUGCUCg--UAC- -5'
15666 3' -52 NC_004065.1 + 19415 0.66 0.996238
Target:  5'- cCGCCGGcgucggcggagguGCcGGAGGCAccgcgcugcuggcGAUGAGCGUGg -3'
miRNA:   3'- -GUGGCU-------------UGcUCUUCGU-------------CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 149908 0.66 0.995998
Target:  5'- uGCCGGuuggAUGAGggGCgcgcggcucggcaggAGGCGGGCuUGa -3'
miRNA:   3'- gUGGCU----UGCUCuuCG---------------UCUGCUCGuAC- -5'
15666 3' -52 NC_004065.1 + 64914 0.66 0.995745
Target:  5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3'
miRNA:   3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 74799 0.66 0.995056
Target:  5'- gCGCuCGcGCaAGAuGCuGACGAGCGUGg -3'
miRNA:   3'- -GUG-GCuUGcUCUuCGuCUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 82573 0.66 0.995056
Target:  5'- aGCgGGGCGAGAucugcucgucagAGUcGGCGAGCAc- -3'
miRNA:   3'- gUGgCUUGCUCU------------UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 125381 0.66 0.996354
Target:  5'- gGCUGGGCGAcGgcGCGGugGuGCcgGc -3'
miRNA:   3'- gUGGCUUGCU-CuuCGUCugCuCGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.