Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 149908 | 0.66 | 0.995998 |
Target: 5'- uGCCGGuuggAUGAGggGCgcgcggcucggcaggAGGCGGGCuUGa -3' miRNA: 3'- gUGGCU----UGCUCuuCG---------------UCUGCUCGuAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 64914 | 0.66 | 0.995745 |
Target: 5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3' miRNA: 3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 56599 | 0.66 | 0.995745 |
Target: 5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3' miRNA: 3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 74799 | 0.66 | 0.995056 |
Target: 5'- gCGCuCGcGCaAGAuGCuGACGAGCGUGg -3' miRNA: 3'- -GUG-GCuUGcUCUuCGuCUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 82573 | 0.66 | 0.995056 |
Target: 5'- aGCgGGGCGAGAucugcucgucagAGUcGGCGAGCAc- -3' miRNA: 3'- gUGgCUUGCUCU------------UCGuCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 161829 | 0.66 | 0.993407 |
Target: 5'- --aCGGACGGGcGGGCGGACGGGgAc- -3' miRNA: 3'- gugGCUUGCUC-UUCGUCUGCUCgUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 125381 | 0.66 | 0.996354 |
Target: 5'- gGCUGGGCGAcGgcGCGGugGuGCcgGc -3' miRNA: 3'- gUGGCUUGCU-CuuCGUCugCuCGuaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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