miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 149816 0.7 0.95983
Target:  5'- gUACCcGACGAGcgcGAGuCGGACGAGCGc- -3'
miRNA:   3'- -GUGGcUUGCUC---UUC-GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 115534 0.69 0.96332
Target:  5'- uCACCGugauGCG---GGCGGGCGAGCGUc -3'
miRNA:   3'- -GUGGCu---UGCucuUCGUCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 63585 0.69 0.96332
Target:  5'- cCAUCGAGaggaaGaAGAGGCuGACGAGCAc- -3'
miRNA:   3'- -GUGGCUUg----C-UCUUCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 69163 0.69 0.96332
Target:  5'- aCGCUGGACGAGgcGgAGGCGAagGCGa- -3'
miRNA:   3'- -GUGGCUUGCUCuuCgUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 154033 0.69 0.96332
Target:  5'- aCGuuGucauCGAGAGGUAGugGAGgAUGg -3'
miRNA:   3'- -GUggCuu--GCUCUUCGUCugCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 202388 0.69 0.966592
Target:  5'- aCAUCGcgcACGAGAcgGGCGGACGaAGCGg- -3'
miRNA:   3'- -GUGGCu--UGCUCU--UCGUCUGC-UCGUac -5'
15666 3' -52 NC_004065.1 + 142669 0.69 0.972508
Target:  5'- gGCCGAgggGCGAGggGgAG-UGAGCGa- -3'
miRNA:   3'- gUGGCU---UGCUCuuCgUCuGCUCGUac -5'
15666 3' -52 NC_004065.1 + 138169 0.69 0.974907
Target:  5'- aUACCGGgacuacaACGAGAgcAGCccgaAGACGAGCGc- -3'
miRNA:   3'- -GUGGCU-------UGCUCU--UCG----UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 69082 0.69 0.975164
Target:  5'- aCGCaGAuCGAGGAGguGGaGAGCAUGa -3'
miRNA:   3'- -GUGgCUuGCUCUUCguCUgCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 93841 0.69 0.975164
Target:  5'- aGCCGAggucgguagGCGGGAAGCuggGGAgcCGAGCcgGa -3'
miRNA:   3'- gUGGCU---------UGCUCUUCG---UCU--GCUCGuaC- -5'
15666 3' -52 NC_004065.1 + 54688 0.69 0.975164
Target:  5'- aCAgCGAGCGAGAGGCugAGGCGAa---- -3'
miRNA:   3'- -GUgGCUUGCUCUUCG--UCUGCUcguac -5'
15666 3' -52 NC_004065.1 + 48618 0.68 0.979906
Target:  5'- aCACCGucGACGAGAAGUauGGGCGcgaccAGCGa- -3'
miRNA:   3'- -GUGGC--UUGCUCUUCG--UCUGC-----UCGUac -5'
15666 3' -52 NC_004065.1 + 199161 0.68 0.979906
Target:  5'- gCGCgCGAuCGAGAGGCuGGACGGGaagGUGa -3'
miRNA:   3'- -GUG-GCUuGCUCUUCG-UCUGCUCg--UAC- -5'
15666 3' -52 NC_004065.1 + 108500 0.68 0.982008
Target:  5'- -gUCGGACGGaAAGCGccGACGAGCGUa -3'
miRNA:   3'- guGGCUUGCUcUUCGU--CUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 79139 0.68 0.982008
Target:  5'- aACUGAuuuuCGAGAAGgAGACGGuGCAc- -3'
miRNA:   3'- gUGGCUu---GCUCUUCgUCUGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 111214 0.68 0.982008
Target:  5'- aCGgCGAAgGuGGAGguGACGAGgAUGu -3'
miRNA:   3'- -GUgGCUUgCuCUUCguCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 75437 0.68 0.982008
Target:  5'- cCGCCGAACGGGccgcaugccAGUAGAgGAGCc-- -3'
miRNA:   3'- -GUGGCUUGCUCu--------UCGUCUgCUCGuac -5'
15666 3' -52 NC_004065.1 + 105575 0.68 0.982008
Target:  5'- uCAUCGAGgGAacaGAGguGGCGAGCAUc -3'
miRNA:   3'- -GUGGCUUgCUc--UUCguCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 33219 0.68 0.98394
Target:  5'- --gCGGGCGAGGuguccGCAGACGAGgGUc -3'
miRNA:   3'- gugGCUUGCUCUu----CGUCUGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 59130 0.68 0.98394
Target:  5'- gACCGAGCGAGcGAGCgcgAGGCGAcgacgGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-UUCG---UCUGCU-----CGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.