miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 59130 0.68 0.98394
Target:  5'- gACCGAGCGAGcGAGCgcgAGGCGAcgacgGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-UUCG---UCUGCU-----CGUac -5'
15666 3' -52 NC_004065.1 + 141207 0.68 0.98394
Target:  5'- gCGCCG-ACGAcAGGCAGAuCGcGCGUGc -3'
miRNA:   3'- -GUGGCuUGCUcUUCGUCU-GCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 101153 0.68 0.98394
Target:  5'- uGCCGGACGAucAGCAGuGCGcGGCGg- -3'
miRNA:   3'- gUGGCUUGCUcuUCGUC-UGC-UCGUac -5'
15666 3' -52 NC_004065.1 + 20722 0.68 0.98554
Target:  5'- gACUGAAgGAGGcccggccGGCugcuGGCGGGCGUGc -3'
miRNA:   3'- gUGGCUUgCUCU-------UCGu---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 54507 0.68 0.98571
Target:  5'- uCGCCGGACGGGAGau-GACGAuGUGUGc -3'
miRNA:   3'- -GUGGCUUGCUCUUcguCUGCU-CGUAC- -5'
15666 3' -52 NC_004065.1 + 59566 0.68 0.98571
Target:  5'- aGCCGAugGCGAcGGGCAG-CGAcugcGCAUGg -3'
miRNA:   3'- gUGGCU--UGCUcUUCGUCuGCU----CGUAC- -5'
15666 3' -52 NC_004065.1 + 74959 0.68 0.98571
Target:  5'- uGCCGAAgGGGAAGUggaAGACGAacugguGCAg- -3'
miRNA:   3'- gUGGCUUgCUCUUCG---UCUGCU------CGUac -5'
15666 3' -52 NC_004065.1 + 196500 0.68 0.98571
Target:  5'- gCGCCGAACGuGucgauGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCuCuucguCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 42981 0.68 0.98571
Target:  5'- cCGCCGcgcuGCGAucacuGggGCGGAgGAGCGc- -3'
miRNA:   3'- -GUGGCu---UGCU-----CuuCGUCUgCUCGUac -5'
15666 3' -52 NC_004065.1 + 126307 0.67 0.987172
Target:  5'- uCACCGAGaCGcAGAuggacgugcugaaGGUGGGCGAGCGg- -3'
miRNA:   3'- -GUGGCUU-GC-UCU-------------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 125286 0.67 0.987327
Target:  5'- gGCCuGAACGGGcGGCuguguGACGAGCc-- -3'
miRNA:   3'- gUGG-CUUGCUCuUCGu----CUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 3803 0.67 0.987327
Target:  5'- -uCCGGAUGAGGAGaugcugcggaAGAUGAGCGa- -3'
miRNA:   3'- guGGCUUGCUCUUCg---------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 69229 0.67 0.987327
Target:  5'- uCGCUGAACGAGAucaagGGCGuGAagaugcugaaGAGCGUGc -3'
miRNA:   3'- -GUGGCUUGCUCU-----UCGU-CUg---------CUCGUAC- -5'
15666 3' -52 NC_004065.1 + 227873 0.67 0.987327
Target:  5'- --aCGGACGGGGggagacGGCGGACGAGgAUc -3'
miRNA:   3'- gugGCUUGCUCU------UCGUCUGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 20849 0.67 0.9888
Target:  5'- gCGCCGGuccGCGAGcGGUagguagagAGGCGAGCGa- -3'
miRNA:   3'- -GUGGCU---UGCUCuUCG--------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 224528 0.67 0.9888
Target:  5'- gCGCUGGAuCGuGcuGCGGGCGAGaCGUGg -3'
miRNA:   3'- -GUGGCUU-GCuCuuCGUCUGCUC-GUAC- -5'
15666 3' -52 NC_004065.1 + 96546 0.67 0.98935
Target:  5'- aGCUGGACGAGGAGuCGcuggacucguccgccGACGAGCc-- -3'
miRNA:   3'- gUGGCUUGCUCUUC-GU---------------CUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 100287 0.67 0.990135
Target:  5'- aCGCCGcGgGGGcGGCGGACGAGgCGa- -3'
miRNA:   3'- -GUGGCuUgCUCuUCGUCUGCUC-GUac -5'
15666 3' -52 NC_004065.1 + 111398 0.67 0.990135
Target:  5'- gACCuua-GAGggGCAGACGAcGCGc- -3'
miRNA:   3'- gUGGcuugCUCuuCGUCUGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 74843 0.67 0.991228
Target:  5'- gACCGAgggGCGcAGGuugaggcggcgguGGUAGACGGGCAg- -3'
miRNA:   3'- gUGGCU---UGC-UCU-------------UCGUCUGCUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.