Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 93778 | 0.67 | 0.991343 |
Target: 5'- aGCCGGGgagcuggucCGGGAAGcCAGGCGGGUccGg -3' miRNA: 3'- gUGGCUU---------GCUCUUC-GUCUGCUCGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 39077 | 0.67 | 0.991792 |
Target: 5'- gGCUGGgggucggggagaucaGCGAGAGGCGGAUGGGg--- -3' miRNA: 3'- gUGGCU---------------UGCUCUUCGUCUGCUCguac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 81863 | 0.67 | 0.992116 |
Target: 5'- -cCCGAugGuGAagagaugguucucgGGCAcGGCGGGCGUGc -3' miRNA: 3'- guGGCUugCuCU--------------UCGU-CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 139332 | 0.67 | 0.992431 |
Target: 5'- --gCGAgACGAGAcgGGcCAGACGGGCAc- -3' miRNA: 3'- gugGCU-UGCUCU--UC-GUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 6524 | 0.67 | 0.992431 |
Target: 5'- uUACCGuccGCGGGGAuGCGGACGGccGCGa- -3' miRNA: 3'- -GUGGCu--UGCUCUU-CGUCUGCU--CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 184851 | 0.67 | 0.992431 |
Target: 5'- gGCCGAGggauCGAGucGAGCGGGCG-GCGg- -3' miRNA: 3'- gUGGCUU----GCUC--UUCGUCUGCuCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 121012 | 0.67 | 0.992431 |
Target: 5'- gUACCgugGAAgGAGcGGCAGGugcUGAGCAUGa -3' miRNA: 3'- -GUGG---CUUgCUCuUCGUCU---GCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 135128 | 0.67 | 0.992431 |
Target: 5'- uCACCGGGCGGGc-GCGG-CGGGUgAUGa -3' miRNA: 3'- -GUGGCUUGCUCuuCGUCuGCUCG-UAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 161829 | 0.66 | 0.993407 |
Target: 5'- --aCGGACGGGcGGGCGGACGGGgAc- -3' miRNA: 3'- gugGCUUGCUC-UUCGUCUGCUCgUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 110181 | 0.66 | 0.993768 |
Target: 5'- gACCuccCGGGAcgcgacggcggccgcGGCGGACGAGCcgGg -3' miRNA: 3'- gUGGcuuGCUCU---------------UCGUCUGCUCGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 223124 | 0.66 | 0.994279 |
Target: 5'- uCGCCGGuuucACGGGGauGGCGGACGcGCu-- -3' miRNA: 3'- -GUGGCU----UGCUCU--UCGUCUGCuCGuac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 113111 | 0.66 | 0.994279 |
Target: 5'- uGCCGGACGAGcuGCuguccGACG-GCAa- -3' miRNA: 3'- gUGGCUUGCUCuuCGu----CUGCuCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 45116 | 0.66 | 0.994279 |
Target: 5'- uGCuCGAGCGAGAGGC-GACGcuGCu-- -3' miRNA: 3'- gUG-GCUUGCUCUUCGuCUGCu-CGuac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 21359 | 0.66 | 0.994279 |
Target: 5'- aCACgGAACG-GAGGguGccgauCGAGCGUa -3' miRNA: 3'- -GUGgCUUGCuCUUCguCu----GCUCGUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 20381 | 0.66 | 0.994279 |
Target: 5'- -cCCGAACGAGAGGUu--CGAGgGUc -3' miRNA: 3'- guGGCUUGCUCUUCGucuGCUCgUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 82573 | 0.66 | 0.995056 |
Target: 5'- aGCgGGGCGAGAucugcucgucagAGUcGGCGAGCAc- -3' miRNA: 3'- gUGgCUUGCUCU------------UCGuCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 74799 | 0.66 | 0.995056 |
Target: 5'- gCGCuCGcGCaAGAuGCuGACGAGCGUGg -3' miRNA: 3'- -GUG-GCuUGcUCUuCGuCUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 90444 | 0.66 | 0.995056 |
Target: 5'- gGCCuGGAguccCGGGAGGCGGGCGAcgGCGg- -3' miRNA: 3'- gUGG-CUU----GCUCUUCGUCUGCU--CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 64914 | 0.66 | 0.995745 |
Target: 5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3' miRNA: 3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 56599 | 0.66 | 0.995745 |
Target: 5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3' miRNA: 3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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