Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 74959 | 0.68 | 0.98571 |
Target: 5'- uGCCGAAgGGGAAGUggaAGACGAacugguGCAg- -3' miRNA: 3'- gUGGCUUgCUCUUCG---UCUGCU------CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 54507 | 0.68 | 0.98571 |
Target: 5'- uCGCCGGACGGGAGau-GACGAuGUGUGc -3' miRNA: 3'- -GUGGCUUGCUCUUcguCUGCU-CGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 42981 | 0.68 | 0.98571 |
Target: 5'- cCGCCGcgcuGCGAucacuGggGCGGAgGAGCGc- -3' miRNA: 3'- -GUGGCu---UGCU-----CuuCGUCUgCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 20722 | 0.68 | 0.98554 |
Target: 5'- gACUGAAgGAGGcccggccGGCugcuGGCGGGCGUGc -3' miRNA: 3'- gUGGCUUgCUCU-------UCGu---CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 101153 | 0.68 | 0.98394 |
Target: 5'- uGCCGGACGAucAGCAGuGCGcGGCGg- -3' miRNA: 3'- gUGGCUUGCUcuUCGUC-UGC-UCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 197405 | 0.68 | 0.98394 |
Target: 5'- -cCUGGuCGAGAGGCGcgccGGCGAGCGUc -3' miRNA: 3'- guGGCUuGCUCUUCGU----CUGCUCGUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 141207 | 0.68 | 0.98394 |
Target: 5'- gCGCCG-ACGAcAGGCAGAuCGcGCGUGc -3' miRNA: 3'- -GUGGCuUGCUcUUCGUCU-GCuCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 33219 | 0.68 | 0.98394 |
Target: 5'- --gCGGGCGAGGuguccGCAGACGAGgGUc -3' miRNA: 3'- gugGCUUGCUCUu----CGUCUGCUCgUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 59130 | 0.68 | 0.98394 |
Target: 5'- gACCGAGCGAGcGAGCgcgAGGCGAcgacgGCGa- -3' miRNA: 3'- gUGGCUUGCUC-UUCG---UCUGCU-----CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 75437 | 0.68 | 0.982008 |
Target: 5'- cCGCCGAACGGGccgcaugccAGUAGAgGAGCc-- -3' miRNA: 3'- -GUGGCUUGCUCu--------UCGUCUgCUCGuac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 108500 | 0.68 | 0.982008 |
Target: 5'- -gUCGGACGGaAAGCGccGACGAGCGUa -3' miRNA: 3'- guGGCUUGCUcUUCGU--CUGCUCGUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 105575 | 0.68 | 0.982008 |
Target: 5'- uCAUCGAGgGAacaGAGguGGCGAGCAUc -3' miRNA: 3'- -GUGGCUUgCUc--UUCguCUGCUCGUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 111214 | 0.68 | 0.982008 |
Target: 5'- aCGgCGAAgGuGGAGguGACGAGgAUGu -3' miRNA: 3'- -GUgGCUUgCuCUUCguCUGCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 79139 | 0.68 | 0.982008 |
Target: 5'- aACUGAuuuuCGAGAAGgAGACGGuGCAc- -3' miRNA: 3'- gUGGCUu---GCUCUUCgUCUGCU-CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 199161 | 0.68 | 0.979906 |
Target: 5'- gCGCgCGAuCGAGAGGCuGGACGGGaagGUGa -3' miRNA: 3'- -GUG-GCUuGCUCUUCG-UCUGCUCg--UAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 48618 | 0.68 | 0.979906 |
Target: 5'- aCACCGucGACGAGAAGUauGGGCGcgaccAGCGa- -3' miRNA: 3'- -GUGGC--UUGCUCUUCG--UCUGC-----UCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 93841 | 0.69 | 0.975164 |
Target: 5'- aGCCGAggucgguagGCGGGAAGCuggGGAgcCGAGCcgGa -3' miRNA: 3'- gUGGCU---------UGCUCUUCG---UCU--GCUCGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 54688 | 0.69 | 0.975164 |
Target: 5'- aCAgCGAGCGAGAGGCugAGGCGAa---- -3' miRNA: 3'- -GUgGCUUGCUCUUCG--UCUGCUcguac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 69082 | 0.69 | 0.975164 |
Target: 5'- aCGCaGAuCGAGGAGguGGaGAGCAUGa -3' miRNA: 3'- -GUGgCUuGCUCUUCguCUgCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 138169 | 0.69 | 0.974907 |
Target: 5'- aUACCGGgacuacaACGAGAgcAGCccgaAGACGAGCGc- -3' miRNA: 3'- -GUGGCU-------UGCUCU--UCG----UCUGCUCGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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