Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 142669 | 0.69 | 0.972508 |
Target: 5'- gGCCGAgggGCGAGggGgAG-UGAGCGa- -3' miRNA: 3'- gUGGCU---UGCUCuuCgUCuGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 202388 | 0.69 | 0.966592 |
Target: 5'- aCAUCGcgcACGAGAcgGGCGGACGaAGCGg- -3' miRNA: 3'- -GUGGCu--UGCUCU--UCGUCUGC-UCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 69163 | 0.69 | 0.96332 |
Target: 5'- aCGCUGGACGAGgcGgAGGCGAagGCGa- -3' miRNA: 3'- -GUGGCUUGCUCuuCgUCUGCU--CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 154033 | 0.69 | 0.96332 |
Target: 5'- aCGuuGucauCGAGAGGUAGugGAGgAUGg -3' miRNA: 3'- -GUggCuu--GCUCUUCGUCugCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 115534 | 0.69 | 0.96332 |
Target: 5'- uCACCGugauGCG---GGCGGGCGAGCGUc -3' miRNA: 3'- -GUGGCu---UGCucuUCGUCUGCUCGUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 63585 | 0.69 | 0.96332 |
Target: 5'- cCAUCGAGaggaaGaAGAGGCuGACGAGCAc- -3' miRNA: 3'- -GUGGCUUg----C-UCUUCGuCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 149816 | 0.7 | 0.95983 |
Target: 5'- gUACCcGACGAGcgcGAGuCGGACGAGCGc- -3' miRNA: 3'- -GUGGcUUGCUC---UUC-GUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 81203 | 0.7 | 0.95983 |
Target: 5'- gGCCGAGCGAG-GGCAuGuuGGGCAa- -3' miRNA: 3'- gUGGCUUGCUCuUCGU-CugCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 51061 | 0.7 | 0.95983 |
Target: 5'- aCugCGAAcccCGAGGAGUAGAuuCGAGgAUGa -3' miRNA: 3'- -GugGCUU---GCUCUUCGUCU--GCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 119990 | 0.7 | 0.956118 |
Target: 5'- gCGCCGAGCGGGuggaagaacacGGCGGGCGGuGCcgGc -3' miRNA: 3'- -GUGGCUUGCUCu----------UCGUCUGCU-CGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 111505 | 0.7 | 0.952179 |
Target: 5'- gCGCCG-ACGA--GGCAGAggcgauCGAGCGUGa -3' miRNA: 3'- -GUGGCuUGCUcuUCGUCU------GCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 146104 | 0.7 | 0.94801 |
Target: 5'- aCGCCGucgGAGAAGaucucGACGGGCGUGa -3' miRNA: 3'- -GUGGCuugCUCUUCgu---CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 211353 | 0.7 | 0.94801 |
Target: 5'- aACCGAgGCGAGAcGGCGGGC-AGCAg- -3' miRNA: 3'- gUGGCU-UGCUCU-UCGUCUGcUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 222979 | 0.7 | 0.94801 |
Target: 5'- -cCCGGGCGAGGAGCuccuGACGAucgaGCcgGu -3' miRNA: 3'- guGGCUUGCUCUUCGu---CUGCU----CGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 19132 | 0.7 | 0.94801 |
Target: 5'- gGCCGuucgGgGGGGAGCGGGCGuGCcgGg -3' miRNA: 3'- gUGGCu---UgCUCUUCGUCUGCuCGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 107041 | 0.7 | 0.938968 |
Target: 5'- aACUGAACGAGAgcAGCGuGGCGAGaCGg- -3' miRNA: 3'- gUGGCUUGCUCU--UCGU-CUGCUC-GUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 71962 | 0.7 | 0.938491 |
Target: 5'- cCGCCGGugGAGccGGGCAGcccggagGCGAcGCAUGc -3' miRNA: 3'- -GUGGCUugCUC--UUCGUC-------UGCU-CGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 41489 | 0.71 | 0.928974 |
Target: 5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3' miRNA: 3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 133947 | 0.71 | 0.928974 |
Target: 5'- uCACaCGGcCGAGAcccGCGGACGGGCAa- -3' miRNA: 3'- -GUG-GCUuGCUCUu--CGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 128813 | 0.71 | 0.928974 |
Target: 5'- gACCG-ACGuGAAgGCGGACGAGCc-- -3' miRNA: 3'- gUGGCuUGCuCUU-CGUCUGCUCGuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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