miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 176583 0.71 0.928449
Target:  5'- aCGCUGGgauaGCGgaaguguggaauuAGAGGCAGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU----UGC-------------UCUUCGUCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 118887 0.71 0.916295
Target:  5'- aCGCCGAggaggaggaagaagACGAGGAGgAcGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU--------------UGCUCUUCgU-CUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 87218 0.71 0.912185
Target:  5'- -uCUGGGCGAGggGCGcuucgggggcGACGAGCGa- -3'
miRNA:   3'- guGGCUUGCUCuuCGU----------CUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 126579 0.71 0.912185
Target:  5'- aCACgGugggcGGCGGGGAGCGccuGGCGGGCGUGa -3'
miRNA:   3'- -GUGgC-----UUGCUCUUCGU---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 138432 0.72 0.906111
Target:  5'- cCGCCGugcguccuCGAGGggucggGGCGGGCGAGCAg- -3'
miRNA:   3'- -GUGGCuu------GCUCU------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 34615 0.72 0.906111
Target:  5'- aGCCGAGCGgcGGAGGguGGCGuGCuUGc -3'
miRNA:   3'- gUGGCUUGC--UCUUCguCUGCuCGuAC- -5'
15666 3' -52 NC_004065.1 + 122402 0.72 0.899801
Target:  5'- ---aGAGCGAGAuGCAGACGuugcGCAUGu -3'
miRNA:   3'- guggCUUGCUCUuCGUCUGCu---CGUAC- -5'
15666 3' -52 NC_004065.1 + 85370 0.72 0.899801
Target:  5'- aACCGAACGAGAucAGUAGACacAGaCAUGc -3'
miRNA:   3'- gUGGCUUGCUCU--UCGUCUGc-UC-GUAC- -5'
15666 3' -52 NC_004065.1 + 76998 0.72 0.886487
Target:  5'- uGCUGGAgGAGGAGgAGGCG-GCGUGc -3'
miRNA:   3'- gUGGCUUgCUCUUCgUCUGCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 88718 0.72 0.879489
Target:  5'- uCGCgGcGCGAGcGGCGGAUGAGCAc- -3'
miRNA:   3'- -GUGgCuUGCUCuUCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 74041 0.73 0.864836
Target:  5'- uCGCCGGaguGCGAGAcgaGGCGGAgGAGCu-- -3'
miRNA:   3'- -GUGGCU---UGCUCU---UCGUCUgCUCGuac -5'
15666 3' -52 NC_004065.1 + 150325 0.73 0.864836
Target:  5'- aGCUGAugGAGAAGCgGGACcGGCAg- -3'
miRNA:   3'- gUGGCUugCUCUUCG-UCUGcUCGUac -5'
15666 3' -52 NC_004065.1 + 150743 0.73 0.84934
Target:  5'- gGCCGAGCGGGAgaaGGCGGuCGAuGCGg- -3'
miRNA:   3'- gUGGCUUGCUCU---UCGUCuGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 226105 0.73 0.84934
Target:  5'- aGCCGAACGAuucgaAAGCAGGCGGgggucgccGCGUGg -3'
miRNA:   3'- gUGGCUUGCUc----UUCGUCUGCU--------CGUAC- -5'
15666 3' -52 NC_004065.1 + 146385 0.73 0.84934
Target:  5'- uGCgGAugGAGAAGguGAUGucGCGUGa -3'
miRNA:   3'- gUGgCUugCUCUUCguCUGCu-CGUAC- -5'
15666 3' -52 NC_004065.1 + 121417 0.73 0.841293
Target:  5'- cCGCCGGACGGcGGcuucAGCGGAUGGGCGc- -3'
miRNA:   3'- -GUGGCUUGCU-CU----UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 186016 0.75 0.788354
Target:  5'- gAUCGAGCGAGcgagcgaacgaccGGGCGGGCGGGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-------------UUCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 130909 0.75 0.780051
Target:  5'- uGCCG-ACGuuGGGCAuGACGGGCGUGg -3'
miRNA:   3'- gUGGCuUGCucUUCGU-CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 23567 0.75 0.780051
Target:  5'- gGgCGGGCGGGcAGGCAGGCGGGCugGUGa -3'
miRNA:   3'- gUgGCUUGCUC-UUCGUCUGCUCG--UAC- -5'
15666 3' -52 NC_004065.1 + 94339 0.76 0.735096
Target:  5'- gCGCCGAgcgaaagGCGAGAGGCAGAgcaaaagcggagcguCGAGCGg- -3'
miRNA:   3'- -GUGGCU-------UGCUCUUCGUCU---------------GCUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.