Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 175793 | 0.76 | 0.732148 |
Target: 5'- uCGCCGAAUGAGAccucGguGGCGAGgAUGa -3' miRNA: 3'- -GUGGCUUGCUCUu---CguCUGCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 116344 | 0.76 | 0.702288 |
Target: 5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3' miRNA: 3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 113903 | 0.77 | 0.661685 |
Target: 5'- aCGCCGGACGAGAgGGCGGAgauCGcGCGUGu -3' miRNA: 3'- -GUGGCUUGCUCU-UCGUCU---GCuCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 149441 | 0.77 | 0.641204 |
Target: 5'- gGCCGAGCGAGcGGauCGGACGAGCGc- -3' miRNA: 3'- gUGGCUUGCUCuUC--GUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 58468 | 0.78 | 0.63095 |
Target: 5'- aACCGAGCGAGAacuugaccgugGGCGGAUuAGCGUGc -3' miRNA: 3'- gUGGCUUGCUCU-----------UCGUCUGcUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 88168 | 0.79 | 0.549569 |
Target: 5'- uCGCCGGACGAGcGGCGGACGGGa--- -3' miRNA: 3'- -GUGGCUUGCUCuUCGUCUGCUCguac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 7449 | 1.09 | 0.010539 |
Target: 5'- gCACCGAACGAGAAGCAGACGAGCAUGa -3' miRNA: 3'- -GUGGCUUGCUCUUCGUCUGCUCGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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