miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 111505 0.7 0.952179
Target:  5'- gCGCCG-ACGA--GGCAGAggcgauCGAGCGUGa -3'
miRNA:   3'- -GUGGCuUGCUcuUCGUCU------GCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 113111 0.66 0.994279
Target:  5'- uGCCGGACGAGcuGCuguccGACG-GCAa- -3'
miRNA:   3'- gUGGCUUGCUCuuCGu----CUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 113903 0.77 0.661685
Target:  5'- aCGCCGGACGAGAgGGCGGAgauCGcGCGUGu -3'
miRNA:   3'- -GUGGCUUGCUCU-UCGUCU---GCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 115534 0.69 0.96332
Target:  5'- uCACCGugauGCG---GGCGGGCGAGCGUc -3'
miRNA:   3'- -GUGGCu---UGCucuUCGUCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 116344 0.76 0.702288
Target:  5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 118887 0.71 0.916295
Target:  5'- aCGCCGAggaggaggaagaagACGAGGAGgAcGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU--------------UGCUCUUCgU-CUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 119990 0.7 0.956118
Target:  5'- gCGCCGAGCGGGuggaagaacacGGCGGGCGGuGCcgGc -3'
miRNA:   3'- -GUGGCUUGCUCu----------UCGUCUGCU-CGuaC- -5'
15666 3' -52 NC_004065.1 + 121012 0.67 0.992431
Target:  5'- gUACCgugGAAgGAGcGGCAGGugcUGAGCAUGa -3'
miRNA:   3'- -GUGG---CUUgCUCuUCGUCU---GCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 121417 0.73 0.841293
Target:  5'- cCGCCGGACGGcGGcuucAGCGGAUGGGCGc- -3'
miRNA:   3'- -GUGGCUUGCU-CU----UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 122402 0.72 0.899801
Target:  5'- ---aGAGCGAGAuGCAGACGuugcGCAUGu -3'
miRNA:   3'- guggCUUGCUCUuCGUCUGCu---CGUAC- -5'
15666 3' -52 NC_004065.1 + 125286 0.67 0.987327
Target:  5'- gGCCuGAACGGGcGGCuguguGACGAGCc-- -3'
miRNA:   3'- gUGG-CUUGCUCuUCGu----CUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 125381 0.66 0.996354
Target:  5'- gGCUGGGCGAcGgcGCGGugGuGCcgGc -3'
miRNA:   3'- gUGGCUUGCU-CuuCGUCugCuCGuaC- -5'
15666 3' -52 NC_004065.1 + 126307 0.67 0.987172
Target:  5'- uCACCGAGaCGcAGAuggacgugcugaaGGUGGGCGAGCGg- -3'
miRNA:   3'- -GUGGCUU-GC-UCU-------------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 126579 0.71 0.912185
Target:  5'- aCACgGugggcGGCGGGGAGCGccuGGCGGGCGUGa -3'
miRNA:   3'- -GUGgC-----UUGCUCUUCGU---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 128813 0.71 0.928974
Target:  5'- gACCG-ACGuGAAgGCGGACGAGCc-- -3'
miRNA:   3'- gUGGCuUGCuCUU-CGUCUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 130909 0.75 0.780051
Target:  5'- uGCCG-ACGuuGGGCAuGACGGGCGUGg -3'
miRNA:   3'- gUGGCuUGCucUUCGU-CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 133947 0.71 0.928974
Target:  5'- uCACaCGGcCGAGAcccGCGGACGGGCAa- -3'
miRNA:   3'- -GUG-GCUuGCUCUu--CGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 135128 0.67 0.992431
Target:  5'- uCACCGGGCGGGc-GCGG-CGGGUgAUGa -3'
miRNA:   3'- -GUGGCUUGCUCuuCGUCuGCUCG-UAC- -5'
15666 3' -52 NC_004065.1 + 138169 0.69 0.974907
Target:  5'- aUACCGGgacuacaACGAGAgcAGCccgaAGACGAGCGc- -3'
miRNA:   3'- -GUGGCU-------UGCUCU--UCG----UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 138432 0.72 0.906111
Target:  5'- cCGCCGugcguccuCGAGGggucggGGCGGGCGAGCAg- -3'
miRNA:   3'- -GUGGCuu------GCUCU------UCGUCUGCUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.