miRNA display CGI


Results 81 - 100 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 139332 0.67 0.992431
Target:  5'- --gCGAgACGAGAcgGGcCAGACGGGCAc- -3'
miRNA:   3'- gugGCU-UGCUCU--UC-GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 141207 0.68 0.98394
Target:  5'- gCGCCG-ACGAcAGGCAGAuCGcGCGUGc -3'
miRNA:   3'- -GUGGCuUGCUcUUCGUCU-GCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 142669 0.69 0.972508
Target:  5'- gGCCGAgggGCGAGggGgAG-UGAGCGa- -3'
miRNA:   3'- gUGGCU---UGCUCuuCgUCuGCUCGUac -5'
15666 3' -52 NC_004065.1 + 146104 0.7 0.94801
Target:  5'- aCGCCGucgGAGAAGaucucGACGGGCGUGa -3'
miRNA:   3'- -GUGGCuugCUCUUCgu---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 146385 0.73 0.84934
Target:  5'- uGCgGAugGAGAAGguGAUGucGCGUGa -3'
miRNA:   3'- gUGgCUugCUCUUCguCUGCu-CGUAC- -5'
15666 3' -52 NC_004065.1 + 149441 0.77 0.641204
Target:  5'- gGCCGAGCGAGcGGauCGGACGAGCGc- -3'
miRNA:   3'- gUGGCUUGCUCuUC--GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 149816 0.7 0.95983
Target:  5'- gUACCcGACGAGcgcGAGuCGGACGAGCGc- -3'
miRNA:   3'- -GUGGcUUGCUC---UUC-GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 149908 0.66 0.995998
Target:  5'- uGCCGGuuggAUGAGggGCgcgcggcucggcaggAGGCGGGCuUGa -3'
miRNA:   3'- gUGGCU----UGCUCuuCG---------------UCUGCUCGuAC- -5'
15666 3' -52 NC_004065.1 + 150325 0.73 0.864836
Target:  5'- aGCUGAugGAGAAGCgGGACcGGCAg- -3'
miRNA:   3'- gUGGCUugCUCUUCG-UCUGcUCGUac -5'
15666 3' -52 NC_004065.1 + 150651 0.66 0.996354
Target:  5'- gCGCgCGGACGcu--GCGGGCGuGCGUGu -3'
miRNA:   3'- -GUG-GCUUGCucuuCGUCUGCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 150743 0.73 0.84934
Target:  5'- gGCCGAGCGGGAgaaGGCGGuCGAuGCGg- -3'
miRNA:   3'- gUGGCUUGCUCU---UCGUCuGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 154033 0.69 0.96332
Target:  5'- aCGuuGucauCGAGAGGUAGugGAGgAUGg -3'
miRNA:   3'- -GUggCuu--GCUCUUCGUCugCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 161829 0.66 0.993407
Target:  5'- --aCGGACGGGcGGGCGGACGGGgAc- -3'
miRNA:   3'- gugGCUUGCUC-UUCGUCUGCUCgUac -5'
15666 3' -52 NC_004065.1 + 175793 0.76 0.732148
Target:  5'- uCGCCGAAUGAGAccucGguGGCGAGgAUGa -3'
miRNA:   3'- -GUGGCUUGCUCUu---CguCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 176583 0.71 0.928449
Target:  5'- aCGCUGGgauaGCGgaaguguggaauuAGAGGCAGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU----UGC-------------UCUUCGUCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 184851 0.67 0.992431
Target:  5'- gGCCGAGggauCGAGucGAGCGGGCG-GCGg- -3'
miRNA:   3'- gUGGCUU----GCUC--UUCGUCUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 186016 0.75 0.788354
Target:  5'- gAUCGAGCGAGcgagcgaacgaccGGGCGGGCGGGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-------------UUCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 196500 0.68 0.98571
Target:  5'- gCGCCGAACGuGucgauGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCuCuucguCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 197405 0.68 0.98394
Target:  5'- -cCUGGuCGAGAGGCGcgccGGCGAGCGUc -3'
miRNA:   3'- guGGCUuGCUCUUCGU----CUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 199161 0.68 0.979906
Target:  5'- gCGCgCGAuCGAGAGGCuGGACGGGaagGUGa -3'
miRNA:   3'- -GUG-GCUuGCUCUUCG-UCUGCUCg--UAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.