miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 119990 0.7 0.956118
Target:  5'- gCGCCGAGCGGGuggaagaacacGGCGGGCGGuGCcgGc -3'
miRNA:   3'- -GUGGCUUGCUCu----------UCGUCUGCU-CGuaC- -5'
15666 3' -52 NC_004065.1 + 118887 0.71 0.916295
Target:  5'- aCGCCGAggaggaggaagaagACGAGGAGgAcGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU--------------UGCUCUUCgU-CUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 116344 0.76 0.702288
Target:  5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 115534 0.69 0.96332
Target:  5'- uCACCGugauGCG---GGCGGGCGAGCGUc -3'
miRNA:   3'- -GUGGCu---UGCucuUCGUCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 113903 0.77 0.661685
Target:  5'- aCGCCGGACGAGAgGGCGGAgauCGcGCGUGu -3'
miRNA:   3'- -GUGGCUUGCUCU-UCGUCU---GCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 113111 0.66 0.994279
Target:  5'- uGCCGGACGAGcuGCuguccGACG-GCAa- -3'
miRNA:   3'- gUGGCUUGCUCuuCGu----CUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 111505 0.7 0.952179
Target:  5'- gCGCCG-ACGA--GGCAGAggcgauCGAGCGUGa -3'
miRNA:   3'- -GUGGCuUGCUcuUCGUCU------GCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 111398 0.67 0.990135
Target:  5'- gACCuua-GAGggGCAGACGAcGCGc- -3'
miRNA:   3'- gUGGcuugCUCuuCGUCUGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 111214 0.68 0.982008
Target:  5'- aCGgCGAAgGuGGAGguGACGAGgAUGu -3'
miRNA:   3'- -GUgGCUUgCuCUUCguCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 110181 0.66 0.993768
Target:  5'- gACCuccCGGGAcgcgacggcggccgcGGCGGACGAGCcgGg -3'
miRNA:   3'- gUGGcuuGCUCU---------------UCGUCUGCUCGuaC- -5'
15666 3' -52 NC_004065.1 + 108500 0.68 0.982008
Target:  5'- -gUCGGACGGaAAGCGccGACGAGCGUa -3'
miRNA:   3'- guGGCUUGCUcUUCGU--CUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 107041 0.7 0.938968
Target:  5'- aACUGAACGAGAgcAGCGuGGCGAGaCGg- -3'
miRNA:   3'- gUGGCUUGCUCU--UCGU-CUGCUC-GUac -5'
15666 3' -52 NC_004065.1 + 105575 0.68 0.982008
Target:  5'- uCAUCGAGgGAacaGAGguGGCGAGCAUc -3'
miRNA:   3'- -GUGGCUUgCUc--UUCguCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 101153 0.68 0.98394
Target:  5'- uGCCGGACGAucAGCAGuGCGcGGCGg- -3'
miRNA:   3'- gUGGCUUGCUcuUCGUC-UGC-UCGUac -5'
15666 3' -52 NC_004065.1 + 100287 0.67 0.990135
Target:  5'- aCGCCGcGgGGGcGGCGGACGAGgCGa- -3'
miRNA:   3'- -GUGGCuUgCUCuUCGUCUGCUC-GUac -5'
15666 3' -52 NC_004065.1 + 99933 0.66 0.995745
Target:  5'- aGCUGGACGAGGccAGCGGGCuGAuGCu-- -3'
miRNA:   3'- gUGGCUUGCUCU--UCGUCUG-CU-CGuac -5'
15666 3' -52 NC_004065.1 + 96546 0.67 0.98935
Target:  5'- aGCUGGACGAGGAGuCGcuggacucguccgccGACGAGCc-- -3'
miRNA:   3'- gUGGCUUGCUCUUC-GU---------------CUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 94339 0.76 0.735096
Target:  5'- gCGCCGAgcgaaagGCGAGAGGCAGAgcaaaagcggagcguCGAGCGg- -3'
miRNA:   3'- -GUGGCU-------UGCUCUUCGUCU---------------GCUCGUac -5'
15666 3' -52 NC_004065.1 + 93841 0.69 0.975164
Target:  5'- aGCCGAggucgguagGCGGGAAGCuggGGAgcCGAGCcgGa -3'
miRNA:   3'- gUGGCU---------UGCUCUUCG---UCU--GCUCGuaC- -5'
15666 3' -52 NC_004065.1 + 93778 0.67 0.991343
Target:  5'- aGCCGGGgagcuggucCGGGAAGcCAGGCGGGUccGg -3'
miRNA:   3'- gUGGCUU---------GCUCUUC-GUCUGCUCGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.