miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 67142 0.66 0.996354
Target:  5'- gCGCCuGGACGcGAucGCGGACGAGaagGUGa -3'
miRNA:   3'- -GUGG-CUUGCuCUu-CGUCUGCUCg--UAC- -5'
15666 3' -52 NC_004065.1 + 64914 0.66 0.995745
Target:  5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3'
miRNA:   3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 63585 0.69 0.96332
Target:  5'- cCAUCGAGaggaaGaAGAGGCuGACGAGCAc- -3'
miRNA:   3'- -GUGGCUUg----C-UCUUCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 59566 0.68 0.98571
Target:  5'- aGCCGAugGCGAcGGGCAG-CGAcugcGCAUGg -3'
miRNA:   3'- gUGGCU--UGCUcUUCGUCuGCU----CGUAC- -5'
15666 3' -52 NC_004065.1 + 59130 0.68 0.98394
Target:  5'- gACCGAGCGAGcGAGCgcgAGGCGAcgacgGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-UUCG---UCUGCU-----CGUac -5'
15666 3' -52 NC_004065.1 + 58468 0.78 0.63095
Target:  5'- aACCGAGCGAGAacuugaccgugGGCGGAUuAGCGUGc -3'
miRNA:   3'- gUGGCUUGCUCU-----------UCGUCUGcUCGUAC- -5'
15666 3' -52 NC_004065.1 + 56599 0.66 0.995745
Target:  5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3'
miRNA:   3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 54688 0.69 0.975164
Target:  5'- aCAgCGAGCGAGAGGCugAGGCGAa---- -3'
miRNA:   3'- -GUgGCUUGCUCUUCG--UCUGCUcguac -5'
15666 3' -52 NC_004065.1 + 54507 0.68 0.98571
Target:  5'- uCGCCGGACGGGAGau-GACGAuGUGUGc -3'
miRNA:   3'- -GUGGCUUGCUCUUcguCUGCU-CGUAC- -5'
15666 3' -52 NC_004065.1 + 51061 0.7 0.95983
Target:  5'- aCugCGAAcccCGAGGAGUAGAuuCGAGgAUGa -3'
miRNA:   3'- -GugGCUU---GCUCUUCGUCU--GCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 48618 0.68 0.979906
Target:  5'- aCACCGucGACGAGAAGUauGGGCGcgaccAGCGa- -3'
miRNA:   3'- -GUGGC--UUGCUCUUCG--UCUGC-----UCGUac -5'
15666 3' -52 NC_004065.1 + 45116 0.66 0.994279
Target:  5'- uGCuCGAGCGAGAGGC-GACGcuGCu-- -3'
miRNA:   3'- gUG-GCUUGCUCUUCGuCUGCu-CGuac -5'
15666 3' -52 NC_004065.1 + 42981 0.68 0.98571
Target:  5'- cCGCCGcgcuGCGAucacuGggGCGGAgGAGCGc- -3'
miRNA:   3'- -GUGGCu---UGCU-----CuuCGUCUgCUCGUac -5'
15666 3' -52 NC_004065.1 + 41489 0.71 0.928974
Target:  5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3'
miRNA:   3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 39077 0.67 0.991792
Target:  5'- gGCUGGgggucggggagaucaGCGAGAGGCGGAUGGGg--- -3'
miRNA:   3'- gUGGCU---------------UGCUCUUCGUCUGCUCguac -5'
15666 3' -52 NC_004065.1 + 34615 0.72 0.906111
Target:  5'- aGCCGAGCGgcGGAGGguGGCGuGCuUGc -3'
miRNA:   3'- gUGGCUUGC--UCUUCguCUGCuCGuAC- -5'
15666 3' -52 NC_004065.1 + 33219 0.68 0.98394
Target:  5'- --gCGGGCGAGGuguccGCAGACGAGgGUc -3'
miRNA:   3'- gugGCUUGCUCUu----CGUCUGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 23567 0.75 0.780051
Target:  5'- gGgCGGGCGGGcAGGCAGGCGGGCugGUGa -3'
miRNA:   3'- gUgGCUUGCUC-UUCGUCUGCUCG--UAC- -5'
15666 3' -52 NC_004065.1 + 21359 0.66 0.994279
Target:  5'- aCACgGAACG-GAGGguGccgauCGAGCGUa -3'
miRNA:   3'- -GUGgCUUGCuCUUCguCu----GCUCGUAc -5'
15666 3' -52 NC_004065.1 + 20849 0.67 0.9888
Target:  5'- gCGCCGGuccGCGAGcGGUagguagagAGGCGAGCGa- -3'
miRNA:   3'- -GUGGCU---UGCUCuUCG--------UCUGCUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.