miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 88168 0.79 0.549569
Target:  5'- uCGCCGGACGAGcGGCGGACGGGa--- -3'
miRNA:   3'- -GUGGCUUGCUCuUCGUCUGCUCguac -5'
15666 3' -52 NC_004065.1 + 138432 0.72 0.906111
Target:  5'- cCGCCGugcguccuCGAGGggucggGGCGGGCGAGCAg- -3'
miRNA:   3'- -GUGGCuu------GCUCU------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 176583 0.71 0.928449
Target:  5'- aCGCUGGgauaGCGgaaguguggaauuAGAGGCAGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU----UGC-------------UCUUCGUCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 41489 0.71 0.928974
Target:  5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3'
miRNA:   3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 142669 0.69 0.972508
Target:  5'- gGCCGAgggGCGAGggGgAG-UGAGCGa- -3'
miRNA:   3'- gUGGCU---UGCUCuuCgUCuGCUCGUac -5'
15666 3' -52 NC_004065.1 + 202388 0.69 0.966592
Target:  5'- aCAUCGcgcACGAGAcgGGCGGACGaAGCGg- -3'
miRNA:   3'- -GUGGCu--UGCUCU--UCGUCUGC-UCGUac -5'
15666 3' -52 NC_004065.1 + 154033 0.69 0.96332
Target:  5'- aCGuuGucauCGAGAGGUAGugGAGgAUGg -3'
miRNA:   3'- -GUggCuu--GCUCUUCGUCugCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 69163 0.69 0.96332
Target:  5'- aCGCUGGACGAGgcGgAGGCGAagGCGa- -3'
miRNA:   3'- -GUGGCUUGCUCuuCgUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 63585 0.69 0.96332
Target:  5'- cCAUCGAGaggaaGaAGAGGCuGACGAGCAc- -3'
miRNA:   3'- -GUGGCUUg----C-UCUUCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 115534 0.69 0.96332
Target:  5'- uCACCGugauGCG---GGCGGGCGAGCGUc -3'
miRNA:   3'- -GUGGCu---UGCucuUCGUCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 81203 0.7 0.95983
Target:  5'- gGCCGAGCGAG-GGCAuGuuGGGCAa- -3'
miRNA:   3'- gUGGCUUGCUCuUCGU-CugCUCGUac -5'
15666 3' -52 NC_004065.1 + 133947 0.71 0.928974
Target:  5'- uCACaCGGcCGAGAcccGCGGACGGGCAa- -3'
miRNA:   3'- -GUG-GCUuGCUCUu--CGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 128813 0.71 0.928974
Target:  5'- gACCG-ACGuGAAgGCGGACGAGCc-- -3'
miRNA:   3'- gUGGCuUGCuCUU-CGUCUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 71962 0.7 0.938491
Target:  5'- cCGCCGGugGAGccGGGCAGcccggagGCGAcGCAUGc -3'
miRNA:   3'- -GUGGCUugCUC--UUCGUC-------UGCU-CGUAC- -5'
15666 3' -52 NC_004065.1 + 119990 0.7 0.956118
Target:  5'- gCGCCGAGCGGGuggaagaacacGGCGGGCGGuGCcgGc -3'
miRNA:   3'- -GUGGCUUGCUCu----------UCGUCUGCU-CGuaC- -5'
15666 3' -52 NC_004065.1 + 51061 0.7 0.95983
Target:  5'- aCugCGAAcccCGAGGAGUAGAuuCGAGgAUGa -3'
miRNA:   3'- -GugGCUU---GCUCUUCGUCU--GCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 125381 0.66 0.996354
Target:  5'- gGCUGGGCGAcGgcGCGGugGuGCcgGc -3'
miRNA:   3'- gUGGCUUGCU-CuuCGUCugCuCGuaC- -5'
15666 3' -52 NC_004065.1 + 149441 0.77 0.641204
Target:  5'- gGCCGAGCGAGcGGauCGGACGAGCGc- -3'
miRNA:   3'- gUGGCUUGCUCuUC--GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 116344 0.76 0.702288
Target:  5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 94339 0.76 0.735096
Target:  5'- gCGCCGAgcgaaagGCGAGAGGCAGAgcaaaagcggagcguCGAGCGg- -3'
miRNA:   3'- -GUGGCU-------UGCUCUUCGUCU---------------GCUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.