Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 149816 | 0.7 | 0.95983 |
Target: 5'- gUACCcGACGAGcgcGAGuCGGACGAGCGc- -3' miRNA: 3'- -GUGGcUUGCUC---UUC-GUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 111505 | 0.7 | 0.952179 |
Target: 5'- gCGCCG-ACGA--GGCAGAggcgauCGAGCGUGa -3' miRNA: 3'- -GUGGCuUGCUcuUCGUCU------GCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 146104 | 0.7 | 0.94801 |
Target: 5'- aCGCCGucgGAGAAGaucucGACGGGCGUGa -3' miRNA: 3'- -GUGGCuugCUCUUCgu---CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 211353 | 0.7 | 0.94801 |
Target: 5'- aACCGAgGCGAGAcGGCGGGC-AGCAg- -3' miRNA: 3'- gUGGCU-UGCUCU-UCGUCUGcUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 222979 | 0.7 | 0.94801 |
Target: 5'- -cCCGGGCGAGGAGCuccuGACGAucgaGCcgGu -3' miRNA: 3'- guGGCUUGCUCUUCGu---CUGCU----CGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 19132 | 0.7 | 0.94801 |
Target: 5'- gGCCGuucgGgGGGGAGCGGGCGuGCcgGg -3' miRNA: 3'- gUGGCu---UgCUCUUCGUCUGCuCGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 7449 | 1.09 | 0.010539 |
Target: 5'- gCACCGAACGAGAAGCAGACGAGCAUGa -3' miRNA: 3'- -GUGGCUUGCUCUUCGUCUGCUCGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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