miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 108500 0.68 0.982008
Target:  5'- -gUCGGACGGaAAGCGccGACGAGCGUa -3'
miRNA:   3'- guGGCUUGCUcUUCGU--CUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 186016 0.75 0.788354
Target:  5'- gAUCGAGCGAGcgagcgaacgaccGGGCGGGCGGGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-------------UUCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 146385 0.73 0.84934
Target:  5'- uGCgGAugGAGAAGguGAUGucGCGUGa -3'
miRNA:   3'- gUGgCUugCUCUUCguCUGCu-CGUAC- -5'
15666 3' -52 NC_004065.1 + 125381 0.66 0.996354
Target:  5'- gGCUGGGCGAcGgcGCGGugGuGCcgGc -3'
miRNA:   3'- gUGGCUUGCU-CuuCGUCugCuCGuaC- -5'
15666 3' -52 NC_004065.1 + 90444 0.66 0.995056
Target:  5'- gGCCuGGAguccCGGGAGGCGGGCGAcgGCGg- -3'
miRNA:   3'- gUGG-CUU----GCUCUUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 113111 0.66 0.994279
Target:  5'- uGCCGGACGAGcuGCuguccGACG-GCAa- -3'
miRNA:   3'- gUGGCUUGCUCuuCGu----CUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 139332 0.67 0.992431
Target:  5'- --gCGAgACGAGAcgGGcCAGACGGGCAc- -3'
miRNA:   3'- gugGCU-UGCUCU--UC-GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 111398 0.67 0.990135
Target:  5'- gACCuua-GAGggGCAGACGAcGCGc- -3'
miRNA:   3'- gUGGcuugCUCuuCGUCUGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 42981 0.68 0.98571
Target:  5'- cCGCCGcgcuGCGAucacuGggGCGGAgGAGCGc- -3'
miRNA:   3'- -GUGGCu---UGCU-----CuuCGUCUgCUCGUac -5'
15666 3' -52 NC_004065.1 + 197405 0.68 0.98394
Target:  5'- -cCUGGuCGAGAGGCGcgccGGCGAGCGUc -3'
miRNA:   3'- guGGCUuGCUCUUCGU----CUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 39077 0.67 0.991792
Target:  5'- gGCUGGgggucggggagaucaGCGAGAGGCGGAUGGGg--- -3'
miRNA:   3'- gUGGCU---------------UGCUCUUCGUCUGCUCguac -5'
15666 3' -52 NC_004065.1 + 82380 0.66 0.996354
Target:  5'- aCGCUGAAgGGGGAGCAGGgcuCGGGgAc- -3'
miRNA:   3'- -GUGGCUUgCUCUUCGUCU---GCUCgUac -5'
15666 3' -52 NC_004065.1 + 67142 0.66 0.996354
Target:  5'- gCGCCuGGACGcGAucGCGGACGAGaagGUGa -3'
miRNA:   3'- -GUGG-CUUGCuCUu-CGUCUGCUCg--UAC- -5'
15666 3' -52 NC_004065.1 + 69082 0.69 0.975164
Target:  5'- aCGCaGAuCGAGGAGguGGaGAGCAUGa -3'
miRNA:   3'- -GUGgCUuGCUCUUCguCUgCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 226105 0.73 0.84934
Target:  5'- aGCCGAACGAuucgaAAGCAGGCGGgggucgccGCGUGg -3'
miRNA:   3'- gUGGCUUGCUc----UUCGUCUGCU--------CGUAC- -5'
15666 3' -52 NC_004065.1 + 176583 0.71 0.928449
Target:  5'- aCGCUGGgauaGCGgaaguguggaauuAGAGGCAGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU----UGC-------------UCUUCGUCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 41489 0.71 0.928974
Target:  5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3'
miRNA:   3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 79139 0.68 0.982008
Target:  5'- aACUGAuuuuCGAGAAGgAGACGGuGCAc- -3'
miRNA:   3'- gUGGCUu---GCUCUUCgUCUGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 75437 0.68 0.982008
Target:  5'- cCGCCGAACGGGccgcaugccAGUAGAgGAGCc-- -3'
miRNA:   3'- -GUGGCUUGCUCu--------UCGUCUgCUCGuac -5'
15666 3' -52 NC_004065.1 + 48618 0.68 0.979906
Target:  5'- aCACCGucGACGAGAAGUauGGGCGcgaccAGCGa- -3'
miRNA:   3'- -GUGGC--UUGCUCUUCG--UCUGC-----UCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.