miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 115534 0.69 0.96332
Target:  5'- uCACCGugauGCG---GGCGGGCGAGCGUc -3'
miRNA:   3'- -GUGGCu---UGCucuUCGUCUGCUCGUAc -5'
15666 3' -52 NC_004065.1 + 135128 0.67 0.992431
Target:  5'- uCACCGGGCGGGc-GCGG-CGGGUgAUGa -3'
miRNA:   3'- -GUGGCUUGCUCuuCGUCuGCUCG-UAC- -5'
15666 3' -52 NC_004065.1 + 81863 0.67 0.992116
Target:  5'- -cCCGAugGuGAagagaugguucucgGGCAcGGCGGGCGUGc -3'
miRNA:   3'- guGGCUugCuCU--------------UCGU-CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 74843 0.67 0.991228
Target:  5'- gACCGAgggGCGcAGGuugaggcggcgguGGUAGACGGGCAg- -3'
miRNA:   3'- gUGGCU---UGC-UCU-------------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 154033 0.69 0.96332
Target:  5'- aCGuuGucauCGAGAGGUAGugGAGgAUGg -3'
miRNA:   3'- -GUggCuu--GCUCUUCGUCugCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 202388 0.69 0.966592
Target:  5'- aCAUCGcgcACGAGAcgGGCGGACGaAGCGg- -3'
miRNA:   3'- -GUGGCu--UGCUCU--UCGUCUGC-UCGUac -5'
15666 3' -52 NC_004065.1 + 142669 0.69 0.972508
Target:  5'- gGCCGAgggGCGAGggGgAG-UGAGCGa- -3'
miRNA:   3'- gUGGCU---UGCUCuuCgUCuGCUCGUac -5'
15666 3' -52 NC_004065.1 + 69082 0.69 0.975164
Target:  5'- aCGCaGAuCGAGGAGguGGaGAGCAUGa -3'
miRNA:   3'- -GUGgCUuGCUCUUCguCUgCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 48618 0.68 0.979906
Target:  5'- aCACCGucGACGAGAAGUauGGGCGcgaccAGCGa- -3'
miRNA:   3'- -GUGGC--UUGCUCUUCG--UCUGC-----UCGUac -5'
15666 3' -52 NC_004065.1 + 184851 0.67 0.992431
Target:  5'- gGCCGAGggauCGAGucGAGCGGGCG-GCGg- -3'
miRNA:   3'- gUGGCUU----GCUC--UUCGUCUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 161829 0.66 0.993407
Target:  5'- --aCGGACGGGcGGGCGGACGGGgAc- -3'
miRNA:   3'- gugGCUUGCUC-UUCGUCUGCUCgUac -5'
15666 3' -52 NC_004065.1 + 82573 0.66 0.995056
Target:  5'- aGCgGGGCGAGAucugcucgucagAGUcGGCGAGCAc- -3'
miRNA:   3'- gUGgCUUGCUCU------------UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 63585 0.69 0.96332
Target:  5'- cCAUCGAGaggaaGaAGAGGCuGACGAGCAc- -3'
miRNA:   3'- -GUGGCUUg----C-UCUUCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 69163 0.69 0.96332
Target:  5'- aCGCUGGACGAGgcGgAGGCGAagGCGa- -3'
miRNA:   3'- -GUGGCUUGCUCuuCgUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 82380 0.66 0.996354
Target:  5'- aCGCUGAAgGGGGAGCAGGgcuCGGGgAc- -3'
miRNA:   3'- -GUGGCUUgCUCUUCGUCU---GCUCgUac -5'
15666 3' -52 NC_004065.1 + 67142 0.66 0.996354
Target:  5'- gCGCCuGGACGcGAucGCGGACGAGaagGUGa -3'
miRNA:   3'- -GUGG-CUUGCuCUu-CGUCUGCUCg--UAC- -5'
15666 3' -52 NC_004065.1 + 19415 0.66 0.996238
Target:  5'- cCGCCGGcgucggcggagguGCcGGAGGCAccgcgcugcuggcGAUGAGCGUGg -3'
miRNA:   3'- -GUGGCU-------------UGcUCUUCGU-------------CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 64914 0.66 0.995745
Target:  5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3'
miRNA:   3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 56599 0.66 0.995745
Target:  5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3'
miRNA:   3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 74799 0.66 0.995056
Target:  5'- gCGCuCGcGCaAGAuGCuGACGAGCGUGg -3'
miRNA:   3'- -GUG-GCuUGcUCUuCGuCUGCUCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.