miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 135128 0.67 0.992431
Target:  5'- uCACCGGGCGGGc-GCGG-CGGGUgAUGa -3'
miRNA:   3'- -GUGGCUUGCUCuuCGUCuGCUCG-UAC- -5'
15666 3' -52 NC_004065.1 + 184851 0.67 0.992431
Target:  5'- gGCCGAGggauCGAGucGAGCGGGCG-GCGg- -3'
miRNA:   3'- gUGGCUU----GCUC--UUCGUCUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 161829 0.66 0.993407
Target:  5'- --aCGGACGGGcGGGCGGACGGGgAc- -3'
miRNA:   3'- gugGCUUGCUC-UUCGUCUGCUCgUac -5'
15666 3' -52 NC_004065.1 + 82573 0.66 0.995056
Target:  5'- aGCgGGGCGAGAucugcucgucagAGUcGGCGAGCAc- -3'
miRNA:   3'- gUGgCUUGCUCU------------UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 74799 0.66 0.995056
Target:  5'- gCGCuCGcGCaAGAuGCuGACGAGCGUGg -3'
miRNA:   3'- -GUG-GCuUGcUCUuCGuCUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 56599 0.66 0.995745
Target:  5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3'
miRNA:   3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 64914 0.66 0.995745
Target:  5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3'
miRNA:   3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 149908 0.66 0.995998
Target:  5'- uGCCGGuuggAUGAGggGCgcgcggcucggcaggAGGCGGGCuUGa -3'
miRNA:   3'- gUGGCU----UGCUCuuCG---------------UCUGCUCGuAC- -5'
15666 3' -52 NC_004065.1 + 74843 0.67 0.991228
Target:  5'- gACCGAgggGCGcAGGuugaggcggcgguGGUAGACGGGCAg- -3'
miRNA:   3'- gUGGCU---UGC-UCU-------------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 96546 0.67 0.98935
Target:  5'- aGCUGGACGAGGAGuCGcuggacucguccgccGACGAGCc-- -3'
miRNA:   3'- gUGGCUUGCUCUUC-GU---------------CUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 224528 0.67 0.9888
Target:  5'- gCGCUGGAuCGuGcuGCGGGCGAGaCGUGg -3'
miRNA:   3'- -GUGGCUU-GCuCuuCGUCUGCUC-GUAC- -5'
15666 3' -52 NC_004065.1 + 79139 0.68 0.982008
Target:  5'- aACUGAuuuuCGAGAAGgAGACGGuGCAc- -3'
miRNA:   3'- gUGGCUu---GCUCUUCgUCUGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 59130 0.68 0.98394
Target:  5'- gACCGAGCGAGcGAGCgcgAGGCGAcgacgGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-UUCG---UCUGCU-----CGUac -5'
15666 3' -52 NC_004065.1 + 141207 0.68 0.98394
Target:  5'- gCGCCG-ACGAcAGGCAGAuCGcGCGUGc -3'
miRNA:   3'- -GUGGCuUGCUcUUCGUCU-GCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 74959 0.68 0.98571
Target:  5'- uGCCGAAgGGGAAGUggaAGACGAacugguGCAg- -3'
miRNA:   3'- gUGGCUUgCUCUUCG---UCUGCU------CGUac -5'
15666 3' -52 NC_004065.1 + 59566 0.68 0.98571
Target:  5'- aGCCGAugGCGAcGGGCAG-CGAcugcGCAUGg -3'
miRNA:   3'- gUGGCU--UGCUcUUCGUCuGCU----CGUAC- -5'
15666 3' -52 NC_004065.1 + 196500 0.68 0.98571
Target:  5'- gCGCCGAACGuGucgauGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCuCuucguCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 3803 0.67 0.987327
Target:  5'- -uCCGGAUGAGGAGaugcugcggaAGAUGAGCGa- -3'
miRNA:   3'- guGGCUUGCUCUUCg---------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 227873 0.67 0.987327
Target:  5'- --aCGGACGGGGggagacGGCGGACGAGgAUc -3'
miRNA:   3'- gugGCUUGCUCU------UCGUCUGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 20849 0.67 0.9888
Target:  5'- gCGCCGGuccGCGAGcGGUagguagagAGGCGAGCGa- -3'
miRNA:   3'- -GUGGCU---UGCUCuUCG--------UCUGCUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.