miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 3803 0.67 0.987327
Target:  5'- -uCCGGAUGAGGAGaugcugcggaAGAUGAGCGa- -3'
miRNA:   3'- guGGCUUGCUCUUCg---------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 6524 0.67 0.992431
Target:  5'- uUACCGuccGCGGGGAuGCGGACGGccGCGa- -3'
miRNA:   3'- -GUGGCu--UGCUCUU-CGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 7449 1.09 0.010539
Target:  5'- gCACCGAACGAGAAGCAGACGAGCAUGa -3'
miRNA:   3'- -GUGGCUUGCUCUUCGUCUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 19132 0.7 0.94801
Target:  5'- gGCCGuucgGgGGGGAGCGGGCGuGCcgGg -3'
miRNA:   3'- gUGGCu---UgCUCUUCGUCUGCuCGuaC- -5'
15666 3' -52 NC_004065.1 + 19415 0.66 0.996238
Target:  5'- cCGCCGGcgucggcggagguGCcGGAGGCAccgcgcugcuggcGAUGAGCGUGg -3'
miRNA:   3'- -GUGGCU-------------UGcUCUUCGU-------------CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 20381 0.66 0.994279
Target:  5'- -cCCGAACGAGAGGUu--CGAGgGUc -3'
miRNA:   3'- guGGCUUGCUCUUCGucuGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 20722 0.68 0.98554
Target:  5'- gACUGAAgGAGGcccggccGGCugcuGGCGGGCGUGc -3'
miRNA:   3'- gUGGCUUgCUCU-------UCGu---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 20849 0.67 0.9888
Target:  5'- gCGCCGGuccGCGAGcGGUagguagagAGGCGAGCGa- -3'
miRNA:   3'- -GUGGCU---UGCUCuUCG--------UCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 21359 0.66 0.994279
Target:  5'- aCACgGAACG-GAGGguGccgauCGAGCGUa -3'
miRNA:   3'- -GUGgCUUGCuCUUCguCu----GCUCGUAc -5'
15666 3' -52 NC_004065.1 + 23567 0.75 0.780051
Target:  5'- gGgCGGGCGGGcAGGCAGGCGGGCugGUGa -3'
miRNA:   3'- gUgGCUUGCUC-UUCGUCUGCUCG--UAC- -5'
15666 3' -52 NC_004065.1 + 33219 0.68 0.98394
Target:  5'- --gCGGGCGAGGuguccGCAGACGAGgGUc -3'
miRNA:   3'- gugGCUUGCUCUu----CGUCUGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 34615 0.72 0.906111
Target:  5'- aGCCGAGCGgcGGAGGguGGCGuGCuUGc -3'
miRNA:   3'- gUGGCUUGC--UCUUCguCUGCuCGuAC- -5'
15666 3' -52 NC_004065.1 + 39077 0.67 0.991792
Target:  5'- gGCUGGgggucggggagaucaGCGAGAGGCGGAUGGGg--- -3'
miRNA:   3'- gUGGCU---------------UGCUCUUCGUCUGCUCguac -5'
15666 3' -52 NC_004065.1 + 41489 0.71 0.928974
Target:  5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3'
miRNA:   3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 42981 0.68 0.98571
Target:  5'- cCGCCGcgcuGCGAucacuGggGCGGAgGAGCGc- -3'
miRNA:   3'- -GUGGCu---UGCU-----CuuCGUCUgCUCGUac -5'
15666 3' -52 NC_004065.1 + 45116 0.66 0.994279
Target:  5'- uGCuCGAGCGAGAGGC-GACGcuGCu-- -3'
miRNA:   3'- gUG-GCUUGCUCUUCGuCUGCu-CGuac -5'
15666 3' -52 NC_004065.1 + 48618 0.68 0.979906
Target:  5'- aCACCGucGACGAGAAGUauGGGCGcgaccAGCGa- -3'
miRNA:   3'- -GUGGC--UUGCUCUUCG--UCUGC-----UCGUac -5'
15666 3' -52 NC_004065.1 + 51061 0.7 0.95983
Target:  5'- aCugCGAAcccCGAGGAGUAGAuuCGAGgAUGa -3'
miRNA:   3'- -GugGCUU---GCUCUUCGUCU--GCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 54507 0.68 0.98571
Target:  5'- uCGCCGGACGGGAGau-GACGAuGUGUGc -3'
miRNA:   3'- -GUGGCUUGCUCUUcguCUGCU-CGUAC- -5'
15666 3' -52 NC_004065.1 + 54688 0.69 0.975164
Target:  5'- aCAgCGAGCGAGAGGCugAGGCGAa---- -3'
miRNA:   3'- -GUgGCUUGCUCUUCG--UCUGCUcguac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.