miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 229659 0.7 0.993159
Target:  5'- -gGCGGCaGUGGCAGGUggGCGucggGGCGCGc -3'
miRNA:   3'- gaUGCUGcUAUCGUCUA--UGC----UCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 98107 0.7 0.993159
Target:  5'- -gGCGGCGAUGGCGGA--CGAGaACc -3'
miRNA:   3'- gaUGCUGCUAUCGUCUauGCUCgUGc -5'
15667 3' -49.4 NC_004065.1 + 101814 0.7 0.993159
Target:  5'- aCUuCGGCGGUGGCGGG-ACuGGCACu -3'
miRNA:   3'- -GAuGCUGCUAUCGUCUaUGcUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 195055 0.7 0.993535
Target:  5'- -cACGGCGucucucugaaguGCAGGUcggGCGAGCGCGc -3'
miRNA:   3'- gaUGCUGCuau---------CGUCUA---UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 150951 0.69 0.994068
Target:  5'- -gGCGGCGGUucgugcgcGCGGAggACGAGgGCGg -3'
miRNA:   3'- gaUGCUGCUAu-------CGUCUa-UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 100231 0.69 0.994068
Target:  5'- -gACGACGAcccGCGGcc-CGAGCACGc -3'
miRNA:   3'- gaUGCUGCUau-CGUCuauGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 145043 0.69 0.994068
Target:  5'- --uCGAUGAUGcGCGGGUAauAGCACGg -3'
miRNA:   3'- gauGCUGCUAU-CGUCUAUgcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 196804 0.69 0.994403
Target:  5'- -cACGACGAggcgguggggggucgUggucaccugcGGCAGGUGCGGGCgACGg -3'
miRNA:   3'- gaUGCUGCU---------------A----------UCGUCUAUGCUCG-UGC- -5'
15667 3' -49.4 NC_004065.1 + 65902 0.69 0.994876
Target:  5'- cCUGCGGCGGcAGCGGcaGCGGGUcCGu -3'
miRNA:   3'- -GAUGCUGCUaUCGUCuaUGCUCGuGC- -5'
15667 3' -49.4 NC_004065.1 + 42880 0.69 0.994876
Target:  5'- -cGCGGCGcgguGUGGCGucGAggGCGAGCGCa -3'
miRNA:   3'- gaUGCUGC----UAUCGU--CUa-UGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 70122 0.69 0.995593
Target:  5'- -gGCGGCGGcGGCGccGAUcgacagaaacacACGAGCACGc -3'
miRNA:   3'- gaUGCUGCUaUCGU--CUA------------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 173869 0.69 0.995593
Target:  5'- -cGCGGCGAcaUAGgAGGUggACGAGgACGa -3'
miRNA:   3'- gaUGCUGCU--AUCgUCUA--UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 59935 0.69 0.995593
Target:  5'- uCUACGACGAcu-CGGAcgACGAGgACGa -3'
miRNA:   3'- -GAUGCUGCUaucGUCUa-UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 219428 0.69 0.995593
Target:  5'- -cACGAUGAUGGCuGGAUGCGAugGCcUGa -3'
miRNA:   3'- gaUGCUGCUAUCG-UCUAUGCU--CGuGC- -5'
15667 3' -49.4 NC_004065.1 + 27994 0.69 0.996167
Target:  5'- -cGCGGCGGggucauCAGAUcuuuggacagcgcGCGAGCACGg -3'
miRNA:   3'- gaUGCUGCUauc---GUCUA-------------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 35621 0.69 0.996226
Target:  5'- -cACGGCGGcGGCGGcgGCGGGgAUGu -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 75784 0.69 0.996226
Target:  5'- -gGCGGCGGUcggcgagggggAGCGGcgGCGAGgCACc -3'
miRNA:   3'- gaUGCUGCUA-----------UCGUCuaUGCUC-GUGc -5'
15667 3' -49.4 NC_004065.1 + 20891 0.69 0.996226
Target:  5'- cCUGCGACGGagacGGC-GAUACGGuCGCGg -3'
miRNA:   3'- -GAUGCUGCUa---UCGuCUAUGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 109876 0.69 0.996624
Target:  5'- cCU-CGACGGUGGUgggcaccgcggcccGGGgguCGAGCGCGg -3'
miRNA:   3'- -GAuGCUGCUAUCG--------------UCUau-GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 12858 0.69 0.996783
Target:  5'- cCU-CGACGAgAGCAcacacGAgaACGAGCGCGg -3'
miRNA:   3'- -GAuGCUGCUaUCGU-----CUa-UGCUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.