miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 121289 0.68 0.99865
Target:  5'- -cGCGACGAUcGCGGcccCGAGCAa- -3'
miRNA:   3'- gaUGCUGCUAuCGUCuauGCUCGUgc -5'
15667 3' -49.4 NC_004065.1 + 54841 0.68 0.99865
Target:  5'- -aACGACGA--GCGGA---GAGCGCGa -3'
miRNA:   3'- gaUGCUGCUauCGUCUaugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 20858 0.68 0.99865
Target:  5'- -cGCGAgCGGUAgGUAGAgagGCGAGCgacACGg -3'
miRNA:   3'- gaUGCU-GCUAU-CGUCUa--UGCUCG---UGC- -5'
15667 3' -49.4 NC_004065.1 + 58321 0.68 0.99865
Target:  5'- -gGCgGGCGGUGGCGGcgGCG-GCGgCGg -3'
miRNA:   3'- gaUG-CUGCUAUCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 28794 0.68 0.998378
Target:  5'- gUGCGGCGc-AGCAuGcgGCGGGCGCu -3'
miRNA:   3'- gAUGCUGCuaUCGU-CuaUGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 33046 0.68 0.998378
Target:  5'- aCUACGucGCGGacgcAGCGGAUGagaaaGAGCAUGa -3'
miRNA:   3'- -GAUGC--UGCUa---UCGUCUAUg----CUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 102108 0.68 0.998378
Target:  5'- -gGCGGCGAUAGCGcccccGAcgcccccGCGAGCAUu -3'
miRNA:   3'- gaUGCUGCUAUCGU-----CUa------UGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 195675 0.68 0.998378
Target:  5'- -gACGGCGAcgcGGCGGGagcgUACGuGUACGg -3'
miRNA:   3'- gaUGCUGCUa--UCGUCU----AUGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 12701 0.68 0.998378
Target:  5'- uCUGCGGCGAUAcaacGC---UGCGAGUAUGa -3'
miRNA:   3'- -GAUGCUGCUAU----CGucuAUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 127778 0.68 0.998095
Target:  5'- -gGCGACGGggcccaugagcaggcGGCAGAggACGAcGCGCGc -3'
miRNA:   3'- gaUGCUGCUa--------------UCGUCUa-UGCU-CGUGC- -5'
15667 3' -49.4 NC_004065.1 + 168546 0.68 0.998061
Target:  5'- -aGCGGCGGUgguGGCAGcgGCG-GCGgCGg -3'
miRNA:   3'- gaUGCUGCUA---UCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 194073 0.68 0.998061
Target:  5'- -aACGACGAUAgaagucGCGGucg-GAGCACGa -3'
miRNA:   3'- gaUGCUGCUAU------CGUCuaugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 26366 0.68 0.998061
Target:  5'- -gGCGACGGcGGCggGGAUACGGG-GCGu -3'
miRNA:   3'- gaUGCUGCUaUCG--UCUAUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 213133 0.68 0.998061
Target:  5'- cCUGCGugGucaccGUAGUGGcGUugGGGCugGa -3'
miRNA:   3'- -GAUGCugC-----UAUCGUC-UAugCUCGugC- -5'
15667 3' -49.4 NC_004065.1 + 111604 0.68 0.997694
Target:  5'- -gACGAUGAaGGCGGAgauccagGCGAcCACGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCUa------UGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 52674 0.68 0.997694
Target:  5'- --gUGGCGGUGGCGGAUGCGAc---- -3'
miRNA:   3'- gauGCUGCUAUCGUCUAUGCUcgugc -5'
15667 3' -49.4 NC_004065.1 + 185353 0.68 0.997694
Target:  5'- -gGCGGgGGUcuGGCAGAgAUGAGCAgGa -3'
miRNA:   3'- gaUGCUgCUA--UCGUCUaUGCUCGUgC- -5'
15667 3' -49.4 NC_004065.1 + 30857 0.68 0.997531
Target:  5'- -gACGACGAccagccugucgacGGCGGGUuCGAGCGCc -3'
miRNA:   3'- gaUGCUGCUa------------UCGUCUAuGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 203189 0.68 0.99727
Target:  5'- gCUGUGGUGAUacGGCGGAcGCGAGUACGa -3'
miRNA:   3'- -GAUGCUGCUA--UCGUCUaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 194279 0.68 0.99727
Target:  5'- -gACGGCGGcaAGgAGAagaGCGAGCGCGa -3'
miRNA:   3'- gaUGCUGCUa-UCgUCUa--UGCUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.