miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 30857 0.68 0.997531
Target:  5'- -gACGACGAccagccugucgacGGCGGGUuCGAGCGCc -3'
miRNA:   3'- gaUGCUGCUa------------UCGUCUAuGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 32173 0.66 0.9998
Target:  5'- cCUACGGCGcguccCAGAacgaggucUGCGAGCugGu -3'
miRNA:   3'- -GAUGCUGCuauc-GUCU--------AUGCUCGugC- -5'
15667 3' -49.4 NC_004065.1 + 32271 0.66 0.999601
Target:  5'- aCUGCG-CGAUGGCcucGGAgGCGGuCGCGg -3'
miRNA:   3'- -GAUGCuGCUAUCG---UCUaUGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 32923 0.67 0.998966
Target:  5'- -gGCGACGAagacgGccggucggcucccgcGCGGAUGCGGGCGuCGa -3'
miRNA:   3'- gaUGCUGCUa----U---------------CGUCUAUGCUCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 33046 0.68 0.998378
Target:  5'- aCUACGucGCGGacgcAGCGGAUGagaaaGAGCAUGa -3'
miRNA:   3'- -GAUGC--UGCUa---UCGUCUAUg----CUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 35522 0.79 0.734264
Target:  5'- -gGCGACGGaGGUGGggACGGGCACGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 35621 0.69 0.996226
Target:  5'- -cACGGCGGcGGCGGcgGCGGGgAUGu -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 42880 0.69 0.994876
Target:  5'- -cGCGGCGcgguGUGGCGucGAggGCGAGCGCa -3'
miRNA:   3'- gaUGCUGC----UAUCGU--CUa-UGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 43241 0.72 0.968428
Target:  5'- -cGCGGCGucugAGguGAUGCGuAGCACc -3'
miRNA:   3'- gaUGCUGCua--UCguCUAUGC-UCGUGc -5'
15667 3' -49.4 NC_004065.1 + 43380 0.67 0.999387
Target:  5'- -cGCGGCc--GGCGGucuucGCGAGCGCGg -3'
miRNA:   3'- gaUGCUGcuaUCGUCua---UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 44297 0.67 0.999247
Target:  5'- -gGCGAUGAU-GCGGAU---GGCGCGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUAugcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 48108 0.76 0.860045
Target:  5'- -gGCGGCGGUGGCGGcgGCGGugggaccucgcGCACGu -3'
miRNA:   3'- gaUGCUGCUAUCGUCuaUGCU-----------CGUGC- -5'
15667 3' -49.4 NC_004065.1 + 48563 0.8 0.663093
Target:  5'- -cGCGACGAUGG-AGAUgaaaGCGGGCACGg -3'
miRNA:   3'- gaUGCUGCUAUCgUCUA----UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 49761 0.66 0.999681
Target:  5'- -gACGGCGcgcAGCAGGUcgggACaGGCACGg -3'
miRNA:   3'- gaUGCUGCua-UCGUCUA----UGcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 52053 0.67 0.999504
Target:  5'- -gGCGGCGAaacUGGUacaggcuuuGGAgACGAGCACc -3'
miRNA:   3'- gaUGCUGCU---AUCG---------UCUaUGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 52674 0.68 0.997694
Target:  5'- --gUGGCGGUGGCGGAUGCGAc---- -3'
miRNA:   3'- gauGCUGCUAUCGUCUAUGCUcgugc -5'
15667 3' -49.4 NC_004065.1 + 53757 0.73 0.945949
Target:  5'- -gAUGACGAU-GCAGAUcacuGCGAGgACGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUA----UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 54841 0.68 0.99865
Target:  5'- -aACGACGA--GCGGA---GAGCGCGa -3'
miRNA:   3'- gaUGCUGCUauCGUCUaugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 56227 0.7 0.992142
Target:  5'- gUACGACGAUGGCGGugucguccccGUGCu-GCACc -3'
miRNA:   3'- gAUGCUGCUAUCGUC----------UAUGcuCGUGc -5'
15667 3' -49.4 NC_004065.1 + 56399 0.67 0.999387
Target:  5'- aUGCGAcucgcucgcCGAggcuGCAGAagGCGAGCGCc -3'
miRNA:   3'- gAUGCU---------GCUau--CGUCUa-UGCUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.