miRNA display CGI


Results 41 - 60 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 58321 0.68 0.99865
Target:  5'- -gGCgGGCGGUGGCGGcgGCG-GCGgCGg -3'
miRNA:   3'- gaUG-CUGCUAUCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 58596 0.67 0.999504
Target:  5'- --cCGACGAcGGCGGAgucgagaucgACGcGCGCGg -3'
miRNA:   3'- gauGCUGCUaUCGUCUa---------UGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 59150 0.71 0.983298
Target:  5'- -gGCGACGAcGGCgAGAguccgauCGGGCGCGc -3'
miRNA:   3'- gaUGCUGCUaUCG-UCUau-----GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 59289 0.67 0.999247
Target:  5'- ---gGAgGGUGGUAGGaaaguucGCGAGCACGa -3'
miRNA:   3'- gaugCUgCUAUCGUCUa------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 59935 0.69 0.995593
Target:  5'- uCUACGACGAcu-CGGAcgACGAGgACGa -3'
miRNA:   3'- -GAUGCUGCUaucGUCUa-UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 61664 0.75 0.90886
Target:  5'- ---aGACGAUGGCGGuguaGAGCGCGa -3'
miRNA:   3'- gaugCUGCUAUCGUCuaugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 61710 0.77 0.844116
Target:  5'- -cGCGGCGuagcGGCGGAUGCGAGCcauGCGc -3'
miRNA:   3'- gaUGCUGCua--UCGUCUAUGCUCG---UGC- -5'
15667 3' -49.4 NC_004065.1 + 61736 0.66 0.9998
Target:  5'- cCUACGGCauGGUGGUGGAcgccaugGCGcAGCGCa -3'
miRNA:   3'- -GAUGCUG--CUAUCGUCUa------UGC-UCGUGc -5'
15667 3' -49.4 NC_004065.1 + 62471 0.66 0.999746
Target:  5'- --cCGGCGAcGGCAGGaGCGGcCGCGg -3'
miRNA:   3'- gauGCUGCUaUCGUCUaUGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 65831 0.67 0.999504
Target:  5'- -cGCGAUGccGGCGGAgauccGCGcGCACGa -3'
miRNA:   3'- gaUGCUGCuaUCGUCUa----UGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 65902 0.69 0.994876
Target:  5'- cCUGCGGCGGcAGCGGcaGCGGGUcCGu -3'
miRNA:   3'- -GAUGCUGCUaUCGUCuaUGCUCGuGC- -5'
15667 3' -49.4 NC_004065.1 + 67674 0.7 0.993159
Target:  5'- -aGCGGCGGcGGCGGcgGCGGGCcCu -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCGuGc -5'
15667 3' -49.4 NC_004065.1 + 70122 0.69 0.995593
Target:  5'- -gGCGGCGGcGGCGccGAUcgacagaaacacACGAGCACGc -3'
miRNA:   3'- gaUGCUGCUaUCGU--CUA------------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 72973 0.67 0.998883
Target:  5'- uCU-CGACGAU-GCGGAUgaucccccACGAGgACGa -3'
miRNA:   3'- -GAuGCUGCUAuCGUCUA--------UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 74863 0.74 0.936575
Target:  5'- -gGCGGCGGUGGUAGA--CGGGCAgGu -3'
miRNA:   3'- gaUGCUGCUAUCGUCUauGCUCGUgC- -5'
15667 3' -49.4 NC_004065.1 + 75321 0.66 0.999601
Target:  5'- -aGCGGCaugAGCAGccgccuCGAGCACGu -3'
miRNA:   3'- gaUGCUGcuaUCGUCuau---GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 75480 0.7 0.992142
Target:  5'- -gAgGGCGAUGGCGGcgGCGAGgAUc -3'
miRNA:   3'- gaUgCUGCUAUCGUCuaUGCUCgUGc -5'
15667 3' -49.4 NC_004065.1 + 75784 0.69 0.996226
Target:  5'- -gGCGGCGGUcggcgagggggAGCGGcgGCGAGgCACc -3'
miRNA:   3'- gaUGCUGCUA-----------UCGUCuaUGCUC-GUGc -5'
15667 3' -49.4 NC_004065.1 + 75956 0.66 0.999746
Target:  5'- -cGCGAaGAUAcGCAGGaggUGgGGGCGCGg -3'
miRNA:   3'- gaUGCUgCUAU-CGUCU---AUgCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 76637 0.67 0.999247
Target:  5'- -gGCGGCGAgcucauccGCGGcgGCGccGGCGCGa -3'
miRNA:   3'- gaUGCUGCUau------CGUCuaUGC--UCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.