miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 194073 0.68 0.998061
Target:  5'- -aACGACGAUAgaagucGCGGucg-GAGCACGa -3'
miRNA:   3'- gaUGCUGCUAU------CGUCuaugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 185353 0.68 0.997694
Target:  5'- -gGCGGgGGUcuGGCAGAgAUGAGCAgGa -3'
miRNA:   3'- gaUGCUgCUA--UCGUCUaUGCUCGUgC- -5'
15667 3' -49.4 NC_004065.1 + 178193 0.66 0.999746
Target:  5'- -cAgGA-GAUGGaCAGGUugGGGCGCa -3'
miRNA:   3'- gaUgCUgCUAUC-GUCUAugCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 175455 0.72 0.965246
Target:  5'- -cACGGCGA-AGCacaGGAggcUGCGAGCACGc -3'
miRNA:   3'- gaUGCUGCUaUCG---UCU---AUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 173869 0.69 0.995593
Target:  5'- -cGCGGCGAcaUAGgAGGUggACGAGgACGa -3'
miRNA:   3'- gaUGCUGCU--AUCgUCUA--UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 172325 0.7 0.98836
Target:  5'- -gACGACGGU-GCAGAU-C-AGCGCGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUAuGcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 170513 0.71 0.985142
Target:  5'- --cCGAUGGUGGCGGcgGCGGcCACGg -3'
miRNA:   3'- gauGCUGCUAUCGUCuaUGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 169778 0.66 0.999681
Target:  5'- -cGCGACGGguuugggAGCGGGaACGGGaACGg -3'
miRNA:   3'- gaUGCUGCUa------UCGUCUaUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 168546 0.68 0.998061
Target:  5'- -aGCGGCGGUgguGGCAGcgGCG-GCGgCGg -3'
miRNA:   3'- gaUGCUGCUA---UCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 168069 0.72 0.976726
Target:  5'- uUGCGGCGAacucgcgcgAGUAGAUGCGGGUGuCGa -3'
miRNA:   3'- gAUGCUGCUa--------UCGUCUAUGCUCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 167933 0.72 0.964583
Target:  5'- -gGCGACGAUcacugacgcgucGCGGGUucCGAGCACGg -3'
miRNA:   3'- gaUGCUGCUAu-----------CGUCUAu-GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 166808 0.77 0.818761
Target:  5'- cCUGCGugGAgAGCGuGugcUACGAGCACGa -3'
miRNA:   3'- -GAUGCugCUaUCGU-Cu--AUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 164943 0.69 0.996783
Target:  5'- -gGCGGCGGcAGCAGcUGCGGGUGgGu -3'
miRNA:   3'- gaUGCUGCUaUCGUCuAUGCUCGUgC- -5'
15667 3' -49.4 NC_004065.1 + 163648 0.67 0.999504
Target:  5'- -gGCGGCGGcAGCGGcaGCGgaGGCACa -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGC--UCGUGc -5'
15667 3' -49.4 NC_004065.1 + 159942 0.73 0.945949
Target:  5'- -gGCGGCGAcGGCGGcgAgGAGCGCc -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUgCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 154152 0.67 0.999504
Target:  5'- ---gGGCGGUGGCGGcgGCG-GCGgCGg -3'
miRNA:   3'- gaugCUGCUAUCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 152302 0.74 0.936575
Target:  5'- cCUGCGGCGGcGGCGGugccgGCGGGgACGa -3'
miRNA:   3'- -GAUGCUGCUaUCGUCua---UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 151114 0.67 0.999504
Target:  5'- -gGCGACGAcGGCAGcaGCGAagGCGgCGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCU--CGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 150951 0.69 0.994068
Target:  5'- -gGCGGCGGUucgugcgcGCGGAggACGAGgGCGg -3'
miRNA:   3'- gaUGCUGCUAu-------CGUCUa-UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 150345 0.71 0.985142
Target:  5'- ---gGugGAU-GCGGAUGuCGGGCACGu -3'
miRNA:   3'- gaugCugCUAuCGUCUAU-GCUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.