miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 48108 0.76 0.860045
Target:  5'- -gGCGGCGGUGGCGGcgGCGGugggaccucgcGCACGu -3'
miRNA:   3'- gaUGCUGCUAUCGUCuaUGCU-----------CGUGC- -5'
15667 3' -49.4 NC_004065.1 + 61710 0.77 0.844116
Target:  5'- -cGCGGCGuagcGGCGGAUGCGAGCcauGCGc -3'
miRNA:   3'- gaUGCUGCua--UCGUCUAUGCUCG---UGC- -5'
15667 3' -49.4 NC_004065.1 + 88719 0.77 0.844116
Target:  5'- -cGCGGCGcgAGCGGcggAUGAGCACGu -3'
miRNA:   3'- gaUGCUGCuaUCGUCua-UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 127241 0.78 0.800974
Target:  5'- -gGCG-CGGUGGCGGGgaugAUGAGCGCGa -3'
miRNA:   3'- gaUGCuGCUAUCGUCUa---UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 35522 0.79 0.734264
Target:  5'- -gGCGACGGaGGUGGggACGGGCACGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 59150 0.71 0.983298
Target:  5'- -gGCGACGAcGGCgAGAguccgauCGGGCGCGc -3'
miRNA:   3'- gaUGCUGCUaUCG-UCUau-----GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 150345 0.71 0.985142
Target:  5'- ---gGugGAU-GCGGAUGuCGGGCACGu -3'
miRNA:   3'- gaugCugCUAuCGUCUAU-GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 35621 0.69 0.996226
Target:  5'- -cACGGCGGcGGCGGcgGCGGGgAUGu -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 70122 0.69 0.995593
Target:  5'- -gGCGGCGGcGGCGccGAUcgacagaaacacACGAGCACGc -3'
miRNA:   3'- gaUGCUGCUaUCGU--CUA------------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 219428 0.69 0.995593
Target:  5'- -cACGAUGAUGGCuGGAUGCGAugGCcUGa -3'
miRNA:   3'- gaUGCUGCUAUCG-UCUAUGCU--CGuGC- -5'
15667 3' -49.4 NC_004065.1 + 196804 0.69 0.994403
Target:  5'- -cACGACGAggcgguggggggucgUggucaccugcGGCAGGUGCGGGCgACGg -3'
miRNA:   3'- gaUGCUGCU---------------A----------UCGUCUAUGCUCG-UGC- -5'
15667 3' -49.4 NC_004065.1 + 145043 0.69 0.994068
Target:  5'- --uCGAUGAUGcGCGGGUAauAGCACGg -3'
miRNA:   3'- gauGCUGCUAU-CGUCUAUgcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 195055 0.7 0.993535
Target:  5'- -cACGGCGucucucugaaguGCAGGUcggGCGAGCGCGc -3'
miRNA:   3'- gaUGCUGCuau---------CGUCUA---UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 67674 0.7 0.993159
Target:  5'- -aGCGGCGGcGGCGGcgGCGGGCcCu -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCGuGc -5'
15667 3' -49.4 NC_004065.1 + 229659 0.7 0.993159
Target:  5'- -gGCGGCaGUGGCAGGUggGCGucggGGCGCGc -3'
miRNA:   3'- gaUGCUGcUAUCGUCUA--UGC----UCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 101814 0.7 0.993159
Target:  5'- aCUuCGGCGGUGGCGGG-ACuGGCACu -3'
miRNA:   3'- -GAuGCUGCUAUCGUCUaUGcUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 75480 0.7 0.992142
Target:  5'- -gAgGGCGAUGGCGGcgGCGAGgAUc -3'
miRNA:   3'- gaUgCUGCUAUCGUCuaUGCUCgUGc -5'
15667 3' -49.4 NC_004065.1 + 128449 0.7 0.989752
Target:  5'- -cGCGGCGGaGGCGuccGCGGGCGCGa -3'
miRNA:   3'- gaUGCUGCUaUCGUcuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 172325 0.7 0.98836
Target:  5'- -gACGACGGU-GCAGAU-C-AGCGCGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUAuGcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 23563 0.71 0.986826
Target:  5'- aUGCgGGCGGgcgGGCAGGcagGCGGGCugGu -3'
miRNA:   3'- gAUG-CUGCUa--UCGUCUa--UGCUCGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.