miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 62471 0.66 0.999746
Target:  5'- --cCGGCGAcGGCAGGaGCGGcCGCGg -3'
miRNA:   3'- gauGCUGCUaUCGUCUaUGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 18067 0.66 0.999681
Target:  5'- uCU-CGACGAUGGCGGcaGCGAcCGCc -3'
miRNA:   3'- -GAuGCUGCUAUCGUCuaUGCUcGUGc -5'
15667 3' -49.4 NC_004065.1 + 114880 0.66 0.999818
Target:  5'- -gACGACGAUGGCGGugACcucucccuacccggaGAGCGgGg -3'
miRNA:   3'- gaUGCUGCUAUCGUCuaUG---------------CUCGUgC- -5'
15667 3' -49.4 NC_004065.1 + 109840 0.66 0.999583
Target:  5'- gCUGCGGCGGggggccaucgcGCAGGUGcCGGGCGg- -3'
miRNA:   3'- -GAUGCUGCUau---------CGUCUAU-GCUCGUgc -5'
15667 3' -49.4 NC_004065.1 + 49761 0.66 0.999681
Target:  5'- -gACGGCGcgcAGCAGGUcgggACaGGCACGg -3'
miRNA:   3'- gaUGCUGCua-UCGUCUA----UGcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 169778 0.66 0.999681
Target:  5'- -cGCGACGGguuugggAGCGGGaACGGGaACGg -3'
miRNA:   3'- gaUGCUGCUa------UCGUCUaUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 92536 0.66 0.999681
Target:  5'- -cGCGuACGGgcgGGCGGGcGCGcGCACGc -3'
miRNA:   3'- gaUGC-UGCUa--UCGUCUaUGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 30028 0.66 0.999681
Target:  5'- -gGCG-CGGUGGUg---ACGGGCACGa -3'
miRNA:   3'- gaUGCuGCUAUCGucuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 113955 0.66 0.999601
Target:  5'- -gGCGGCGGcAGCGGcgACG-GCGuCGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 109772 0.66 0.999709
Target:  5'- -cGCGcCGGUcAGCAGGgcaggcgcuacgccGCGGGCACGu -3'
miRNA:   3'- gaUGCuGCUA-UCGUCUa-------------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 125773 0.66 0.999681
Target:  5'- -cGCGG-GGUGGCAGAgagucuUGAGCGCc -3'
miRNA:   3'- gaUGCUgCUAUCGUCUau----GCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 99359 0.66 0.999746
Target:  5'- --cCGACGAgcguUGGCAGcgACG-GCGCc -3'
miRNA:   3'- gauGCUGCU----AUCGUCuaUGCuCGUGc -5'
15667 3' -49.4 NC_004065.1 + 109124 0.66 0.9998
Target:  5'- -gACGGaGGUGGCGGGgacgGCGGGUgACGg -3'
miRNA:   3'- gaUGCUgCUAUCGUCUa---UGCUCG-UGC- -5'
15667 3' -49.4 NC_004065.1 + 178193 0.66 0.999746
Target:  5'- -cAgGA-GAUGGaCAGGUugGGGCGCa -3'
miRNA:   3'- gaUgCUgCUAUC-GUCUAugCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 75321 0.66 0.999601
Target:  5'- -aGCGGCaugAGCAGccgccuCGAGCACGu -3'
miRNA:   3'- gaUGCUGcuaUCGUCuau---GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 203223 0.66 0.999601
Target:  5'- uCUAUGugGAcGGaGGcUugGAGCACGu -3'
miRNA:   3'- -GAUGCugCUaUCgUCuAugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 97944 0.66 0.999746
Target:  5'- -gGCGGCGGcGGCAGcgaccGCGAGUAUc -3'
miRNA:   3'- gaUGCUGCUaUCGUCua---UGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 110166 0.66 0.999601
Target:  5'- -gACGGCGGccGCGGcggACGAGC-CGg -3'
miRNA:   3'- gaUGCUGCUauCGUCua-UGCUCGuGC- -5'
15667 3' -49.4 NC_004065.1 + 32173 0.66 0.9998
Target:  5'- cCUACGGCGcguccCAGAacgaggucUGCGAGCugGu -3'
miRNA:   3'- -GAUGCUGCuauc-GUCU--------AUGCUCGugC- -5'
15667 3' -49.4 NC_004065.1 + 117 0.66 0.999746
Target:  5'- gUGCGAUGA-GGUGGcUGCGcGCACGu -3'
miRNA:   3'- gAUGCUGCUaUCGUCuAUGCuCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.