miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 125773 0.66 0.999681
Target:  5'- -cGCGG-GGUGGCAGAgagucuUGAGCGCc -3'
miRNA:   3'- gaUGCUgCUAUCGUCUau----GCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 92536 0.66 0.999681
Target:  5'- -cGCGuACGGgcgGGCGGGcGCGcGCACGc -3'
miRNA:   3'- gaUGC-UGCUa--UCGUCUaUGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 49761 0.66 0.999681
Target:  5'- -gACGGCGcgcAGCAGGUcgggACaGGCACGg -3'
miRNA:   3'- gaUGCUGCua-UCGUCUA----UGcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 30028 0.66 0.999681
Target:  5'- -gGCG-CGGUGGUg---ACGGGCACGa -3'
miRNA:   3'- gaUGCuGCUAUCGucuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 75321 0.66 0.999601
Target:  5'- -aGCGGCaugAGCAGccgccuCGAGCACGu -3'
miRNA:   3'- gaUGCUGcuaUCGUCuau---GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 113955 0.66 0.999601
Target:  5'- -gGCGGCGGcAGCGGcgACG-GCGuCGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 32271 0.66 0.999601
Target:  5'- aCUGCG-CGAUGGCcucGGAgGCGGuCGCGg -3'
miRNA:   3'- -GAUGCuGCUAUCG---UCUaUGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 203223 0.66 0.999601
Target:  5'- uCUAUGugGAcGGaGGcUugGAGCACGu -3'
miRNA:   3'- -GAUGCugCUaUCgUCuAugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 110166 0.66 0.999601
Target:  5'- -gACGGCGGccGCGGcggACGAGC-CGg -3'
miRNA:   3'- gaUGCUGCUauCGUCua-UGCUCGuGC- -5'
15667 3' -49.4 NC_004065.1 + 109840 0.66 0.999583
Target:  5'- gCUGCGGCGGggggccaucgcGCAGGUGcCGGGCGg- -3'
miRNA:   3'- -GAUGCUGCUau---------CGUCUAU-GCUCGUgc -5'
15667 3' -49.4 NC_004065.1 + 142656 0.67 0.999504
Target:  5'- -gGCGAaaGAUGGCccgcGCGAGCGCGa -3'
miRNA:   3'- gaUGCUg-CUAUCGucuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 149052 0.67 0.999504
Target:  5'- -gGCGACGAcGGCGGcgGCaGGC-CGa -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGcUCGuGC- -5'
15667 3' -49.4 NC_004065.1 + 151114 0.67 0.999504
Target:  5'- -gGCGACGAcGGCAGcaGCGAagGCGgCGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCU--CGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 154152 0.67 0.999504
Target:  5'- ---gGGCGGUGGCGGcgGCG-GCGgCGg -3'
miRNA:   3'- gaugCUGCUAUCGUCuaUGCuCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 163648 0.67 0.999504
Target:  5'- -gGCGGCGGcAGCGGcaGCGgaGGCACa -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGC--UCGUGc -5'
15667 3' -49.4 NC_004065.1 + 58596 0.67 0.999504
Target:  5'- --cCGACGAcGGCGGAgucgagaucgACGcGCGCGg -3'
miRNA:   3'- gauGCUGCUaUCGUCUa---------UGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 65831 0.67 0.999504
Target:  5'- -cGCGAUGccGGCGGAgauccGCGcGCACGa -3'
miRNA:   3'- gaUGCUGCuaUCGUCUa----UGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 52053 0.67 0.999504
Target:  5'- -gGCGGCGAaacUGGUacaggcuuuGGAgACGAGCACc -3'
miRNA:   3'- gaUGCUGCU---AUCG---------UCUaUGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 23046 0.67 0.999387
Target:  5'- -aGCGACGGUGGCcGGUcGUGAGgACGa -3'
miRNA:   3'- gaUGCUGCUAUCGuCUA-UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 111215 0.67 0.999387
Target:  5'- -gACGGCGAaGGUGGAggugACGAGgAUGu -3'
miRNA:   3'- gaUGCUGCUaUCGUCUa---UGCUCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.