miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 3' -58.6 NC_004065.1 + 191097 0.66 0.888623
Target:  5'- -cGGCGGCGGCGugGuuauuucucGCgCACGGUGu- -3'
miRNA:   3'- uuUCGCUGCUGCugC---------CG-GUGCCGCua -5'
15668 3' -58.6 NC_004065.1 + 201072 0.66 0.888623
Target:  5'- -uAGCGccccgccucCGGCGACGGagGCGGCGGc -3'
miRNA:   3'- uuUCGCu--------GCUGCUGCCggUGCCGCUa -5'
15668 3' -58.6 NC_004065.1 + 31086 0.66 0.888623
Target:  5'- -uGGCGGCGGCcuUGGCCGCcagGGUGGa -3'
miRNA:   3'- uuUCGCUGCUGcuGCCGGUG---CCGCUa -5'
15668 3' -58.6 NC_004065.1 + 44888 0.66 0.888623
Target:  5'- cGAAGCGAUGA-GGCGaGUgAUGGUGGUg -3'
miRNA:   3'- -UUUCGCUGCUgCUGC-CGgUGCCGCUA- -5'
15668 3' -58.6 NC_004065.1 + 71931 0.66 0.888623
Target:  5'- --uGUGAUGACGGUGGCCuggucggaGGCGAc -3'
miRNA:   3'- uuuCGCUGCUGCUGCCGGug------CCGCUa -5'
15668 3' -58.6 NC_004065.1 + 91178 0.66 0.888623
Target:  5'- cAGGCGACGGCcGCGgaagcGCCGuCGGCGu- -3'
miRNA:   3'- uUUCGCUGCUGcUGC-----CGGU-GCCGCua -5'
15668 3' -58.6 NC_004065.1 + 149383 0.66 0.888623
Target:  5'- cAGGCGAcuCGACGAaacgacaccaGG-CACGGCGAa -3'
miRNA:   3'- uUUCGCU--GCUGCUg---------CCgGUGCCGCUa -5'
15668 3' -58.6 NC_004065.1 + 31383 0.66 0.888623
Target:  5'- cGAGUcggaGACGGaGACGGUgACGGUGGUg -3'
miRNA:   3'- uUUCG----CUGCUgCUGCCGgUGCCGCUA- -5'
15668 3' -58.6 NC_004065.1 + 83996 0.66 0.888623
Target:  5'- --cGCGAUGACGuCGcccGCCAgcuUGGCGGUg -3'
miRNA:   3'- uuuCGCUGCUGCuGC---CGGU---GCCGCUA- -5'
15668 3' -58.6 NC_004065.1 + 37851 0.66 0.888623
Target:  5'- aAAGGCGccauucacuucGCGACGGCGGUgAuCGGCa-- -3'
miRNA:   3'- -UUUCGC-----------UGCUGCUGCCGgU-GCCGcua -5'
15668 3' -58.6 NC_004065.1 + 57337 0.66 0.888623
Target:  5'- -cGGCGACGACcGCGGCUcUGGaaaaaGAUa -3'
miRNA:   3'- uuUCGCUGCUGcUGCCGGuGCCg----CUA- -5'
15668 3' -58.6 NC_004065.1 + 43897 0.66 0.881962
Target:  5'- --uGCGACGGCGGaGGCUGCguuGGUGGUu -3'
miRNA:   3'- uuuCGCUGCUGCUgCCGGUG---CCGCUA- -5'
15668 3' -58.6 NC_004065.1 + 62376 0.66 0.881962
Target:  5'- --cGCGGCGACGAUG-CCGCcucccGCGAg -3'
miRNA:   3'- uuuCGCUGCUGCUGCcGGUGc----CGCUa -5'
15668 3' -58.6 NC_004065.1 + 41246 0.66 0.881962
Target:  5'- ---uCGACGACGcCGuCUACGGCGAc -3'
miRNA:   3'- uuucGCUGCUGCuGCcGGUGCCGCUa -5'
15668 3' -58.6 NC_004065.1 + 225161 0.66 0.881962
Target:  5'- uGGGUGAcCGAgcCGAgGGCgGCGGUGGUg -3'
miRNA:   3'- uUUCGCU-GCU--GCUgCCGgUGCCGCUA- -5'
15668 3' -58.6 NC_004065.1 + 203079 0.66 0.881962
Target:  5'- cGAGCGucAUGGCGGCGGUCGUGGuCGGc -3'
miRNA:   3'- uUUCGC--UGCUGCUGCCGGUGCC-GCUa -5'
15668 3' -58.6 NC_004065.1 + 24371 0.66 0.881962
Target:  5'- -cGGCGACGugGGCaaaGGCCucgcuGCGcGUGAg -3'
miRNA:   3'- uuUCGCUGCugCUG---CCGG-----UGC-CGCUa -5'
15668 3' -58.6 NC_004065.1 + 64201 0.66 0.881962
Target:  5'- cAGGCGGCgGGCGGaGGCagugucgGCGGCGAg -3'
miRNA:   3'- uUUCGCUG-CUGCUgCCGg------UGCCGCUa -5'
15668 3' -58.6 NC_004065.1 + 86196 0.66 0.881962
Target:  5'- cGAGGaCGGCGAUGAgauCGGCgACGG-GAUa -3'
miRNA:   3'- -UUUC-GCUGCUGCU---GCCGgUGCCgCUA- -5'
15668 3' -58.6 NC_004065.1 + 191848 0.66 0.881962
Target:  5'- gAGGGCGucuACGACGACGGUuuuCGCGcGcCGAUc -3'
miRNA:   3'- -UUUCGC---UGCUGCUGCCG---GUGC-C-GCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.