miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 26264 0.67 0.969363
Target:  5'- ---gGACCGUCGuauguUCGUCA-CCGACg -3'
miRNA:   3'- ccugCUGGCAGCc----AGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 112849 0.67 0.972107
Target:  5'- aGAUGuuGCCGUCGGacagcaGcUCGUCCGGCa -3'
miRNA:   3'- cCUGC--UGGCAGCCag----C-AGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 200014 0.67 0.971303
Target:  5'- cGGGC-ACCG-CGGUCGUCAggggcaggugccguUCCG-Cg -3'
miRNA:   3'- -CCUGcUGGCaGCCAGCAGU--------------AGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 174657 0.67 0.959989
Target:  5'- cGGAgGACUGg-GGUCGUCG-CCGGg- -3'
miRNA:   3'- -CCUgCUGGCagCCAGCAGUaGGCUga -5'
15668 5' -55.3 NC_004065.1 + 151492 0.67 0.956467
Target:  5'- --uCGACCuacugGcCGGUCGUC-UCCGACa -3'
miRNA:   3'- ccuGCUGG-----CaGCCAGCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 56053 0.67 0.956467
Target:  5'- aGACGACC--UGGUCGUCAgCCG-Cg -3'
miRNA:   3'- cCUGCUGGcaGCCAGCAGUaGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 149056 0.67 0.959989
Target:  5'- cGGACucgGACUGcCGGUCGUCGUUCc--- -3'
miRNA:   3'- -CCUG---CUGGCaGCCAGCAGUAGGcuga -5'
15668 5' -55.3 NC_004065.1 + 22247 0.67 0.959989
Target:  5'- cGAUGACCGUCGG-CGUgG-CCGugGCg -3'
miRNA:   3'- cCUGCUGGCAGCCaGCAgUaGGC--UGa -5'
15668 5' -55.3 NC_004065.1 + 96771 0.67 0.956467
Target:  5'- cGGAC--UCGUC-GUCGUCcUCCGACg -3'
miRNA:   3'- -CCUGcuGGCAGcCAGCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 57585 0.67 0.963309
Target:  5'- aGA--GCCG-CGGUCGUCG-CCGGCa -3'
miRNA:   3'- cCUgcUGGCaGCCAGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 221954 0.67 0.969363
Target:  5'- aGACGGCCGaaCGGaUCGcgAUCCGGCg -3'
miRNA:   3'- cCUGCUGGCa-GCC-AGCagUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 227723 0.67 0.969363
Target:  5'- cGACGGCCGUC---CGUCuUCCGugUu -3'
miRNA:   3'- cCUGCUGGCAGccaGCAGuAGGCugA- -5'
15668 5' -55.3 NC_004065.1 + 131823 0.67 0.969363
Target:  5'- cGGACGACCuggUGGUCGcccugaUCAUggCCGugUa -3'
miRNA:   3'- -CCUGCUGGca-GCCAGC------AGUA--GGCugA- -5'
15668 5' -55.3 NC_004065.1 + 227528 0.67 0.972107
Target:  5'- cGGACGuCgggggGUCGGUC-UCAUCCGGg- -3'
miRNA:   3'- -CCUGCuGg----CAGCCAGcAGUAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 142010 0.67 0.966432
Target:  5'- cGGCgGAUCGUCGacgacGUCGUCGUCgaCGACg -3'
miRNA:   3'- cCUG-CUGGCAGC-----CAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 120983 0.68 0.948804
Target:  5'- -cAUGACgGUgCGGUCGUCGUUuaCGACg -3'
miRNA:   3'- ccUGCUGgCA-GCCAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 213301 0.68 0.948804
Target:  5'- uGGACGACgGuUCGGUCGUCGguagCG-Ca -3'
miRNA:   3'- -CCUGCUGgC-AGCCAGCAGUag--GCuGa -5'
15668 5' -55.3 NC_004065.1 + 9543 0.68 0.95274
Target:  5'- cGGCGAUCG-CGGUCGgcgUGUgCGACg -3'
miRNA:   3'- cCUGCUGGCaGCCAGCa--GUAgGCUGa -5'
15668 5' -55.3 NC_004065.1 + 151596 0.68 0.95274
Target:  5'- cGACGAgUG-CGG-CGUCAuccUCCGACa -3'
miRNA:   3'- cCUGCUgGCaGCCaGCAGU---AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 97225 0.68 0.948804
Target:  5'- gGGAUGuuCGg-GGUCG-CGUCCGGCg -3'
miRNA:   3'- -CCUGCugGCagCCAGCaGUAGGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.