miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 99565 0.7 0.871156
Target:  5'- cGGACGGCCGU-GGUgCGUCAgguUCUGGg- -3'
miRNA:   3'- -CCUGCUGGCAgCCA-GCAGU---AGGCUga -5'
15668 5' -55.3 NC_004065.1 + 131573 0.7 0.884784
Target:  5'- aGGGCGACCaccaGGUCG---UCCGACUg -3'
miRNA:   3'- -CCUGCUGGcag-CCAGCaguAGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 31124 0.69 0.930923
Target:  5'- cGGGCGcucgaacccGCCGUCgacaggcuGGUCGUCGU-CGGCUu -3'
miRNA:   3'- -CCUGC---------UGGCAG--------CCAGCAGUAgGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 44927 0.69 0.903689
Target:  5'- cGACGACCaUCGcuUCGUCG-CCGACg -3'
miRNA:   3'- cCUGCUGGcAGCc-AGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 140230 0.69 0.92068
Target:  5'- aGACGGCCGcCGauGUCG-UAUCCGAUa -3'
miRNA:   3'- cCUGCUGGCaGC--CAGCaGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 135814 0.69 0.92068
Target:  5'- uGACGGCCGccUCcccGUCGUCcgcccGUCCGACg -3'
miRNA:   3'- cCUGCUGGC--AGc--CAGCAG-----UAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 89174 0.68 0.944656
Target:  5'- cGACGGCCGcUCGcUCGUC-UCCGuCa -3'
miRNA:   3'- cCUGCUGGC-AGCcAGCAGuAGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 22919 0.68 0.935248
Target:  5'- uGGCGGCgGUCGGcgguuccgucucgUCGUCAgauugucgCCGGCa -3'
miRNA:   3'- cCUGCUGgCAGCC-------------AGCAGUa-------GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 199221 0.68 0.935717
Target:  5'- aGGCGAuguaccguccguCCGUCaGUCGUCAUCguCGGCg -3'
miRNA:   3'- cCUGCU------------GGCAGcCAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 132375 0.68 0.940295
Target:  5'- cGGGCaGGCCGUCGcGUCGcccuUC-UCCGAg- -3'
miRNA:   3'- -CCUG-CUGGCAGC-CAGC----AGuAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 97225 0.68 0.948804
Target:  5'- gGGAUGuuCGg-GGUCG-CGUCCGGCg -3'
miRNA:   3'- -CCUGCugGCagCCAGCaGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 150894 0.68 0.944656
Target:  5'- cGACGAguCCGUCGGgaacaaGggGUCCGACg -3'
miRNA:   3'- cCUGCU--GGCAGCCag----CagUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 213301 0.68 0.948804
Target:  5'- uGGACGACgGuUCGGUCGUCGguagCG-Ca -3'
miRNA:   3'- -CCUGCUGgC-AGCCAGCAGUag--GCuGa -5'
15668 5' -55.3 NC_004065.1 + 151596 0.68 0.95274
Target:  5'- cGACGAgUG-CGG-CGUCAuccUCCGACa -3'
miRNA:   3'- cCUGCUgGCaGCCaGCAGU---AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 8313 0.68 0.944656
Target:  5'- aGGACuGACCGU-GGUCGUUggucugguaGUCgGGCg -3'
miRNA:   3'- -CCUG-CUGGCAgCCAGCAG---------UAGgCUGa -5'
15668 5' -55.3 NC_004065.1 + 191691 0.68 0.95274
Target:  5'- aGGACu-CC-UCGGUCGUCA-CCGAg- -3'
miRNA:   3'- -CCUGcuGGcAGCCAGCAGUaGGCUga -5'
15668 5' -55.3 NC_004065.1 + 53691 0.68 0.948804
Target:  5'- cGACcACCGUCGGUCGgggCGagaaCGACg -3'
miRNA:   3'- cCUGcUGGCAGCCAGCa--GUag--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 68628 0.68 0.948804
Target:  5'- cGGCGAUCuucgccUCGGUCGUCGUCUGuuCUc -3'
miRNA:   3'- cCUGCUGGc-----AGCCAGCAGUAGGCu-GA- -5'
15668 5' -55.3 NC_004065.1 + 120983 0.68 0.948804
Target:  5'- -cAUGACgGUgCGGUCGUCGUUuaCGACg -3'
miRNA:   3'- ccUGCUGgCA-GCCAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 212773 0.68 0.948804
Target:  5'- uGGGCGugCGgcucagCGGagGUCGUgCGGCc -3'
miRNA:   3'- -CCUGCugGCa-----GCCagCAGUAgGCUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.